Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2840 ATGAGGGTCCCATCATGGCTACTCCCCTGCTCCACCGCCGCCGCACAACCCAATAATATTAAACCGCCTGAATCCTCCTCCTACTTAATTTCCGACGCGAGCAGCCTTTCTGACACGTCGGCCAATTCTTCATCGTCGTCGACTCCTAGTTCCGACACTAGCTGTTCCAGTCTCCAAAGCAATCTCTCCCTTCAATCCCTACCGTCCATTCCATCTCTTCAGAAACTCCCCGCCGCCACCGATTCCTTCACCGTCACTCTTTCTCAATTCAACGTCGCCTCTTTCAAGCTCCCAATCTCTCATCTCGCCGTTCACGGTGCTTACCTCTACGTCGCCACCGCTCACGAAATCAACGTCTACGATCGAATCACTTTCTCCCACATCACCGCATTCAACGCTCGAGATTCCTCCTCCGGTTCCGTTAAGGGAATCGCCTTTCTCCGCCGCGAAATCCTCACGTCTCACCAAGACGGAAAAATCCGCGTCTGGAGTTTACCTGAGAAGAACAACAATCAATTCAAATTGGTCAACACGCTCCCTACAGTCAACGACCGCCTTCGCCGATTCATACTCCCGAAAAATTACGTCAACGTCCGTCGTCACAAGAAGGTCCTCTGGATTCAACACGCCGACGCCGTCACCGGGATCGCTGTGAACAACGATTCTATTTACTCTGTTTCTTGGGATCGGAGTTTGAAAGTGTGGCGAGGCTCGGACCACCGCTGCGTCGAGTCGGTGAAAGGGGCTCACGAAGACGCGGTGAACGCGGTGGCTGTTTCCGCCGGGGGGACTGTGTACACCGGTTCAGCCGATAGGAAAATCCGAGTGTGGGAGAAACCGGAGGCAGAGAAACGACACGTGCTGGTAGCGACTTTAGAGAAGCACCAATCGGCGGTGAATGCATTAGCGTTAAACGAGGAGGGTTCGTTACTTTTCTCCGGGGCTTGTGATCGGTCAGTTCTGGTTTGGGAAAGAGAAGAGAGTGCGAATTACATGGCGGTGATCGGCGCATTGAGGGGTCACAAAAATGCGATTCTGTGTTTGATCTACGTCTCTGATTTGTTGCTGAGTGGGTCGGCAGATCGGACGGTGAGGGTGTGGCGACGTGGAGGAGATGGGAGTTATAGTTGTTTGTCTGTTCTTGAAGGTCATAAAAAACCGGTGAAATCGCTGGTGGTTGTGTCGGAGGCGGAGGGATTGTCAAATGGTGTCGTATCGGTGTGTAGTGGGAGTCTTGATGGACAGCTCATAGCTTGGAAACTCTCTTTTACGAATCTCAATAGTCCATTGCCCAATTTCAATATTATGAACTGTAAGCATTTGGAATAA 1329 51.62 MRVPSWLLPCSTAAAQPNNIKPPESSSYLISDASSLSDTSANSSSSSTPSSDTSCSSLQSNLSLQSLPSIPSLQKLPAATDSFTVTLSQFNVASFKLPISHLAVHGAYLYVATAHEINVYDRITFSHITAFNARDSSSGSVKGIAFLRREILTSHQDGKIRVWSLPEKNNNQFKLVNTLPTVNDRLRRFILPKNYVNVRRHKKVLWIQHADAVTGIAVNNDSIYSVSWDRSLKVWRGSDHRCVESVKGAHEDAVNAVAVSAGGTVYTGSADRKIRVWEKPEAEKRHVLVATLEKHQSAVNALALNEEGSLLFSGACDRSVLVWEREESANYMAVIGALRGHKNAILCLIYVSDLLLSGSADRTVRVWRRGGDGSYSCLSVLEGHKKPVKSLVVVSEAEGLSNGVVSVCSGSLDGQLIAWKLSFTNLNSPLPNFNIMNCKHLE 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38648967 38650295 - CePI673135_05g028400.1 Cec05g2840 204643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2840 442 Gene3D - 284 430 IPR015943 GO:0005515(InterPro)
Cec05g2840 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 367 - -
Cec05g2840 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 324 - -
Cec05g2840 442 SMART WD40_4 200 236 IPR001680 GO:0005515(InterPro)
Cec05g2840 442 SMART WD40_4 285 324 IPR001680 GO:0005515(InterPro)
Cec05g2840 442 SMART WD40_4 124 164 IPR001680 GO:0005515(InterPro)
Cec05g2840 442 SMART WD40_4 374 420 IPR001680 GO:0005515(InterPro)
Cec05g2840 442 SMART WD40_4 331 368 IPR001680 GO:0005515(InterPro)
Cec05g2840 442 SMART WD40_4 239 278 IPR001680 GO:0005515(InterPro)
Cec05g2840 442 SUPERFAMILY WD40 repeat-like 107 422 IPR036322 GO:0005515(InterPro)
Cec05g2840 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 333 IPR001680 GO:0005515(InterPro)
Cec05g2840 442 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 34 422 IPR045182 -
Cec05g2840 442 MobiDBLite consensus disorder prediction 35 57 - -
Cec05g2840 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 367 IPR001680 GO:0005515(InterPro)
Cec05g2840 442 Gene3D - 72 190 IPR015943 GO:0005515(InterPro)
Cec05g2840 442 Gene3D - 195 283 IPR015943 GO:0005515(InterPro)
Cec05g2840 442 PRINTS G protein beta WD-40 repeat signature 265 279 IPR020472 -
Cec05g2840 442 PRINTS G protein beta WD-40 repeat signature 355 369 IPR020472 -
Cec05g2840 442 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Cec05g2840 442 FunFam BnaA09g28200D protein 196 282 - -
Cec05g2840 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 287 IPR001680 GO:0005515(InterPro)
Cec05g2840 442 Pfam WD domain, G-beta repeat 335 367 IPR001680 GO:0005515(InterPro)
Cec05g2840 442 Pfam WD domain, G-beta repeat 376 419 IPR001680 GO:0005515(InterPro)
Cec05g2840 442 Pfam WD domain, G-beta repeat 288 323 IPR001680 GO:0005515(InterPro)
Cec05g2840 442 Pfam WD domain, G-beta repeat 249 277 IPR001680 GO:0005515(InterPro)
Cec05g2840 442 Pfam WD domain, G-beta repeat 208 235 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2840 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2132 Cec-Chr5:33020022 Cec05g2840 Cec-Chr5:38648967 2.10E-33 dispersed
Cec05g2840 Cec-Chr5:38648967 Cec08g1593 Cec-Chr8:27451714 3.00E-29 dispersed
Cec01g1499 Cec-Chr1:29612936 Cec05g2840 Cec-Chr5:38648967 3.20E-48 transposed
Cec05g2840 Cec-Chr5:38648967 Cec06g1952 Cec-Chr6:32811577 6.00E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g602 . . . . . . Bma14g01832 . . Cmo18g00721 . Cma18g00732 . Car18g00682 Sed06g1708 . . Bhi07g01834 Tan04g0134 Cmetu10g0004 Lac13g0117 Hepe10g1568 . . Cla05g02616 Cam05g2804 Cec05g2840 Cco05g2872 Clacu05g2808 Cmu05g2656 Cre05g2772 . Cone19ag1083 . . . Csa05g02258 Chy10g00828 . Blo06g00839 Blo11g01035 Bda07g01648 . . . . . . . Cmo15g00862 Cma04g01790 Cma15g00831 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49