Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2847 ATGAATTCTCTTTTCCATATTCAAGAGTGGAAGTTTGTTGAACAATCCGGTTTATCTAGCGATCTAGACTCATCTTCTACCAAGTTTGGGCACTGCAAAGCCTTTGGCACTATTGTCACCAATGCAACATCGACATTTCCACAATCGAAACGACATTGCTTTGGGGAATCTGACCCTGGCGAATTTCCCTTAGCTGCTAATCCTTCCATTGTTCTTCATGTCCTGACGGCATGTAACTTGGATCCTCAAGACCTTGCAAAGTTAGAGGCGACATGTTCATTCTTTAGACAGCCTGCAAACTTTGCTCCTGACTATGAATTGTCAATTTCGGAGCTTGCTGCATTAGATATGTGCCAAAAGAGAGCCATATTCAAACCTATGACAGCAGAACAGCATCAAGCATTGAAGCAAAGATGTGGAGGTTCGTGGAAACTGGTATTGAGGTTTTTAGTGGCTGGAGAAACATGTTGCAGAAGGGAAAAATCCATGGCAATAGCAGGACCTGGTCACAGCATCGCTGTCACATCAAAAGGAGCTGTTTACTCCTTTGGATCCAACAGCTCTGGACAGCTTGGACATGGTACCACTGAAGAGGAATCACGGCCTCGCCTCATCAGATCCCTGCAAGGAATTCGAATAATTCAGGCAGCAGCAGGGGGCGGGAGGACAATGTTAATCAGCGACGCCGGGCATGTTTATGCATTTGGCAAGGATTCATTTGGTGAAGCTGAGTATGGTGCTCAAGGAGCTCAAGTTATTACTACACCAAAGTTGGTCGAATCCCTGAAGGATATATTTGTGGTGCAAGCTGCAATTGGAAATTTCTTCACTGCTGTATTATCAAGAGAAGGTAGGGTGTACACATTTTCTTGGGGGACTGACGGTAGGCTCGGTCATCATACCGAACCAAATGACTTGGAACCACGGCCCCTGATGGGAGCATTAGAAAACATTCCAGTTGTTCAAATTGCTGCTGGATATTGCTACCTTCTTGCTCTTGCTTGTCATCCTAGTGGCATGTCAGTATACTCAGTTGGGTGTGGACTGGGTGGGAAGCTCGGTCATGGTTCAAGGACTGATGAGAAACAGCCACGACTTATTGAACAATTTCAGCTTCTGAATCTCCAGCCAGTTGTGGTCGCGGCTGGTGCTTGGCATGCAGCTGTTGTAGGTCGCGATGGTCGAGTTTGTACATGGGGTTGGGGCCGATATGGGTGCCTGGGCCATGGAAATGAGGAATGTGAATCTTCCCCTAAGGTGGTGGAAGCATTAAGCAACGTTAAAGCAGTTCATGTTGCTACAGGAGATTATACAACATTCGTAGTATCTGATGATGGTGACGTGTATTCTTTCGGTTGTGGAGAATCCGCTAGTCTTGGACATAATATCGCCATCCCCGAGGAACAGGGGAATCGGCAACCGCACGTGTTAAGCCCAGAACTAGTCAGGTCTCTGAAGCAAATTAACGAACGGGTAGTTCAGATTAGCCTCACTAATTCAATTTACTGGAATGCACACACCTTTGCACTGACCGAGTCGGGGAAGTTGTATGCATTTGGAGCTGGAGACAAAGGGCAGCTCGGGGTTGAACTTCTGGCGAATCAAACCGAAAGGGGAAATCCAGAGCGAGTTGACATTGATCTGAATTAA 1650 46.61 MNSLFHIQEWKFVEQSGLSSDLDSSSTKFGHCKAFGTIVTNATSTFPQSKRHCFGESDPGEFPLAANPSIVLHVLTACNLDPQDLAKLEATCSFFRQPANFAPDYELSISELAALDMCQKRAIFKPMTAEQHQALKQRCGGSWKLVLRFLVAGETCCRREKSMAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTEEESRPRLIRSLQGIRIIQAAAGGGRTMLISDAGHVYAFGKDSFGEAEYGAQGAQVITTPKLVESLKDIFVVQAAIGNFFTAVLSREGRVYTFSWGTDGRLGHHTEPNDLEPRPLMGALENIPVVQIAAGYCYLLALACHPSGMSVYSVGCGLGGKLGHGSRTDEKQPRLIEQFQLLNLQPVVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEECESSPKVVEALSNVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHNIAIPEEQGNRQPHVLSPELVRSLKQINERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGVELLANQTERGNPERVDIDLN 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38700412 38703722 - CePI673135_05g028470.1 Cec05g2847 204650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2847 549 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 284 336 IPR000408 -
Cec05g2847 549 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 380 390 IPR000408 -
Cec05g2847 549 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 166 241 IPR051210 -
Cec05g2847 549 Gene3D - 337 548 IPR009091 -
Cec05g2847 549 Gene3D - 161 336 IPR009091 -
Cec05g2847 549 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 446 513 IPR000408 -
Cec05g2847 549 Pfam Regulator of chromosome condensation (RCC1) repeat 393 442 IPR000408 -
Cec05g2847 549 Pfam Regulator of chromosome condensation (RCC1) repeat 445 496 IPR000408 -
Cec05g2847 549 Pfam Regulator of chromosome condensation (RCC1) repeat 283 332 IPR000408 -
Cec05g2847 549 Pfam Regulator of chromosome condensation (RCC1) repeat 341 390 IPR000408 -
Cec05g2847 549 Pfam Regulator of chromosome condensation (RCC1) repeat 230 280 IPR000408 -
Cec05g2847 549 Pfam Regulator of chromosome condensation (RCC1) repeat 177 226 IPR000408 -
Cec05g2847 549 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 230 283 IPR000408 -
Cec05g2847 549 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 514 549 IPR000408 -
Cec05g2847 549 PRINTS Chromosome condensation regulator RCC1 signature 270 286 IPR000408 -
Cec05g2847 549 PRINTS Chromosome condensation regulator RCC1 signature 286 300 IPR000408 -
Cec05g2847 549 PRINTS Chromosome condensation regulator RCC1 signature 383 401 IPR000408 -
Cec05g2847 549 PRINTS Chromosome condensation regulator RCC1 signature 441 462 IPR000408 -
Cec05g2847 549 PRINTS Chromosome condensation regulator RCC1 signature 180 196 IPR000408 -
Cec05g2847 549 PRINTS Chromosome condensation regulator RCC1 signature 230 246 IPR000408 -
Cec05g2847 549 SUPERFAMILY RCC1/BLIP-II 162 462 IPR009091 -
Cec05g2847 549 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 394 445 IPR000408 -
Cec05g2847 549 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 178 229 IPR000408 -
Cec05g2847 549 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 340 393 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2847 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2847 Cec-Chr5:38700412 Cec11g1859 Cec-Chr11:32783623 1.30E-53 dispersed
Cec05g2847 Cec-Chr5:38700412 Cec04g0933 Cec-Chr4:28985937 6.10E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44