Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2875 ATGGCGCCGGGATTGGGGTTTTTATGTCGGTGGGGTAAAGAGAAAGACTCTCAAAAGGGAACTCCGGTGGTTGTGACGATGGAGAAACCTAATTTCTCCGTCGTGGAGATCGACGGTCCCGACGCTGTATTCCGGCCGGTGGAGAAAAGTAGAGGCAAAAATGCTAAACAGGTCACGTGGGTTCTTCTTCTGAAGGCCAATCGAGCCGTCGGTTGCATAACTTGGCTTGTAACTGTTCTCTGGGCATTGTTGGGAACAATTAAGAAGAGGCTGATCTACAGGCAAGGAGTCGCCATTGAAGGGGGGAAGTTGGGAAGAGGGAAGTTATTGTTTGGAGTTATTAGAGTTTTCTTAGTAGCTTCCATTGCGATTCTTGCTTTTGAAATTCTTGCTTATTTCAAAGGCTGGCATTATTTTCAGAATTCCAATCTGCATATTCCTCAAGCTTCTGAGTTGCAAGGATTGCTTCATTCATTCTATGTTGCTTGGTTAACTTTTAGAGCAGAGTACATTGCACCCCTCATCCAAACACTCTCTAAATTTTGCATTCTTCTGTTCCTTATCCAATCTGTGGATCGTATGATCCTTTGTCTTGGTTGCCTGTGGATAAAGTACAAAAGAATTGAGCCCAAGATTGAAGGGGATCCCTTCAAGTTGGATGATGAGGAGGGAGCTGGGCACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAACGAGCGTGAGGTTTATGAGCAGTCTATCTCTGCAGTCTGTCAGATTGATTGGCCAAGGGGCCATTTACTAATTCAAGTTCTTGATGATTCTGATGATGAGAGCATCCAACTGCTAATTAAGGCAGAGGTCGCTAAATGGAGCCAAAAGGGGGTAAACATAGTGTATCGCCATCGATTAGTAAGGACAGGATATAAAGCTGGGAATCTCAAGTCTGCAATGAGTTGTGATTATGTTAGAGACTATGAGTTTGTAGCAATTTTTGATGCTGACTTTCAACCTAATCCAGATTTTCTTAAATTGACCATTCCCCATTTCAAGGATAACCCGGAGCTAGGTTTGGTTCAGGCCAGATGGTCTTTTGTGAACCGGGATGAAAATTTGTTGACACGCCTTCAAAATATTAATTTGTGTTTCCACTTTGAGGTAGAACAGCAGGTTAATGGGGTGTTCCTTAATTTCTTTGGTTTCAATGGCACTGCTGGTGTTTGGAGGATTAAAGCCCTGGAGGAGTCTGGAGGGTGGCTTGAAAGAACCACAGTAGAGGATATGGACATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTTGTATTTCTAAACGACGTTAAGGTCCTTTGTGAGGTTCCTGAGTCCTATGAAGCTTATAGGAAGCAGCAACATCGTTGGCATTCTGGTCCTATGCAACTATTCAGGTTGTGTCTTCCAGCAGTCATAAGTTCTAAGATATCAACATGGAAGAAGGCAAATTTGATACTTTTGTTCTTTCTATTAAGGAAGCTTATCCTTCCATTCTATTCCTTCACTTTGTTCTGCATAATTCTTCCTCTAACCATGTTTGTTCCAGAAGCCGAGCTTCCTGTATGGGTGATCTGTTATGTGCCTGTCTTCATGTCATTACTAAACATTCTTCCATCCCCAAAATCTTTTCCTTTTATTGTCCCTTACCTTCTTTTTGAGAACACTATGTCTGTCACCAAATTCAATGCCATGGTATCTGGCTTATTCCAGTTAGGTAGCTCTTATGAGTGGATTGTGACCAAAAAGGCTGGCAGGTCCTCCGAATCCGACTTACTGGCTGCTGCTGAAAGGGACTCCAAGACAATGAATCAAGTGTCGATCTGTAGAGGTGCGTCAGAGAGTGAGATTTCTGAGTTGGCTCACTTAAAGGAACGCAAAGAAGTTGTCTCTGCGCCTGTCAAAAAAGTTAACAAGATATATCGGAAAGAGCTAGCACTCGCGTTTCTTTTACTGTTAGCCTCACTCAGGAGTCTCTTGGCTGCACAAGGAGTCCACTTCTACTTCTTGATGTTCCAAGGTGTGACCTTCCTTCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTGA 2088 43.25 MAPGLGFLCRWGKEKDSQKGTPVVVTMEKPNFSVVEIDGPDAVFRPVEKSRGKNAKQVTWVLLLKANRAVGCITWLVTVLWALLGTIKKRLIYRQGVAIEGGKLGRGKLLFGVIRVFLVASIAILAFEILAYFKGWHYFQNSNLHIPQASELQGLLHSFYVAWLTFRAEYIAPLIQTLSKFCILLFLIQSVDRMILCLGCLWIKYKRIEPKIEGDPFKLDDEEGAGHKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRGHLLIQVLDDSDDESIQLLIKAEVAKWSQKGVNIVYRHRLVRTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTIPHFKDNPELGLVQARWSFVNRDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAVISSKISTWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVWVICYVPVFMSLLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERDSKTMNQVSICRGASESEISELAHLKERKEVVSAPVKKVNKIYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38938389 38941196 + CePI673135_05g028750.1 Cec05g2875 204678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2875 695 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 156 694 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Cec05g2875 695 Pfam Glycosyl transferase family group 2 324 535 IPR001173 -
Cec05g2875 695 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 531 IPR029044 -
Cec05g2875 695 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 221 449 IPR029044 -
Cec05g2875 695 FunFam probable xyloglucan glycosyltransferase 5 223 448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2875 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1124 Cec-Chr4:30809896 Cec05g2875 Cec-Chr5:38938389 6.90E-113 dispersed
Cec05g2875 Cec-Chr5:38938389 Cec09g1990 Cec-Chr9:36938183 9.10E-267 dispersed
Cec05g2875 Cec-Chr5:38938389 Cec10g1960 Cec-Chr10:34395370 3.40E-112 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec09g1884 . 220 382 REM Transcription Factor Family AT1G49480 70.6 8.6e-57 217.2
Cec05g2875 . 1 695 REM Transcription Factor Family AT2G24630 77.0 0.0e+00 1088.6
Cec05g2887 . 1 708 REM Transcription Factor Family AT2G24630 64.1 1.0e-262 902.9
Cec09g1990 . 6 656 REM Transcription Factor Family AT2G24630 68.9 4.0e-262 901.0
Cec08g1735 . 5 698 REM Transcription Factor Family AT2G24630 66.7 5.7e-261 897.1
Cec09g0834 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cec08g0841 . 37 415 REM Transcription Factor Family AT2G24630 52.2 2.4e-110 396.7
Cec05g2875 . 1 695 REM Transcription Factor Family AT2G24630 77.0 0.0e+00 1088.6
Cec05g2887 . 1 708 REM Transcription Factor Family AT2G24630 64.1 1.0e-262 902.9
Cec09g1990 . 6 656 REM Transcription Factor Family AT2G24630 68.9 4.0e-262 901.0
Cec08g1735 . 5 698 REM Transcription Factor Family AT2G24630 66.7 5.7e-261 897.1
Cec09g0834 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cec08g0841 . 37 415 REM Transcription Factor Family AT2G24630 52.2 2.4e-110 396.7
Cec05g2875 . 1 695 REM Transcription Factor Family AT2G24630 77.0 0.0e+00 1088.6
Cec05g2887 . 1 708 REM Transcription Factor Family AT2G24630 64.1 1.0e-262 902.9
Cec09g1990 . 6 656 REM Transcription Factor Family AT2G24630 68.9 4.0e-262 901.0
Cec08g1735 . 5 698 REM Transcription Factor Family AT2G24630 66.7 5.7e-261 897.1
Cec09g0834 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cec08g0841 . 37 415 REM Transcription Factor Family AT2G24630 52.2 2.4e-110 396.7
Cec09g1884 . 220 382 REM Transcription Factor Family AT1G49480 70.6 8.6e-57 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38