Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2882 ATGGCGGTCGATCTGATGAGTTTTCCAAAGATGGATGATCAAATGGCTATACAGGAGGCTGCATCGCAAGGATTGAAGAGTATGGAGCATTTGATTCGTCTTCTTTCTCACAAGCAATCCTCAAGCCATGTTGATTGCTCTGATTTAACTGATGCAACCGTTTCCAAGTTCAAGAAAGTGATATCTCTCCTCAATCGGACCGGTCACGCTAGATTCCGGCGAGGTCCGGTTTCTTCGACATCCTCCTCGTCGTCCGGTTCATCTGCTCATCTCTCTTTTCCTCAAAATCAGGCGATGAATCTCACTCCTACTCCGTTTACTTCACCGGCCGCGGTTCCTGCTCCGCCGTTCACCGCTCCGGCTTCCGTCGCTCAGCCACAGGCGAAAGTCGTCGCTGTGGCGGCGAACATCCTCCAGTCGCAGCCTCAGAGCATGACTCTCGATTTCACTAGGCCGAATATTTTGAACTCAAATCCTAAGGGAACCGATTTGGAATTTTCTAAGGAGACCTTCAGCGTCTCGTCCAGCTCCTCGTTTATGTCCTCAGCCATCACCGGAGACGGAAGCGTATCCAACGGAAAGTTAGGAACGTCGATCTTCTTAGCACCAGCGCCGACTGCTTCCGGTGGTAAGCCGCCGCTCTCGGCGGCGCCTTACAAGAAGAGGTGTCACGAACACGATCATTCCGAAGATTTGTCTGGAAAATTCTCCGGGTCAACATCTGCTTCCGGCAAATGCCATTGCTCAAAGAGAAGAAAAAATCGTACGAAGAAGACGATTCGAGTCCCAGCGATTAGTTCAAAAATCGCAGATATTCCACCGGACGACTACTCGTGGAGGAAGTATGGTCAGAAGCCGATCAAAGGATCTCCATACCCACGGGGATATTACAAGTGTAGCACGATGAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAACGATCCGGCGATGTTGATTGTAACGTACGAAGGGGAGCACCGCCATACGCAGAGCTCGTTGCCGGAAAATATGGCGGCTGGAGTAGCTTTAGTTTTTGAGTCAACTTGA 1056 50.95 MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLIRLLSHKQSSSHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSSTSSSSSGSSAHLSFPQNQAMNLTPTPFTSPAAVPAPPFTAPASVAQPQAKVVAVAANILQSQPQSMTLDFTRPNILNSNPKGTDLEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDLSGKFSGSTSASGKCHCSKRRKNRTKKTIRVPAISSKIADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMAAGVALVFEST 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38992546 38994190 + CePI673135_05g028820.1 Cec05g2882 204685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2882 351 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 334 IPR044810 GO:0003700(InterPro)
Cec05g2882 351 SMART WRKY_cls 273 333 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g2882 351 MobiDBLite consensus disorder prediction 74 92 - -
Cec05g2882 351 ProSiteProfiles WRKY domain profile. 268 334 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g2882 351 Pfam WRKY DNA -binding domain 275 331 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g2882 351 Gene3D WRKY domain 246 334 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g2882 351 MobiDBLite consensus disorder prediction 72 92 - -
Cec05g2882 351 FunFam WRKY transcription factor 65 257 334 - -
Cec05g2882 351 Pfam Plant zinc cluster domain 220 271 IPR018872 -
Cec05g2882 351 SUPERFAMILY WRKY DNA-binding domain 271 333 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1391 Cec-Chr4:33561687 Cec05g2882 Cec-Chr5:38992546 2.90E-52 dispersed
Cec05g2882 Cec-Chr5:38992546 Cec06g1579 Cec-Chr6:29397387 1.10E-69 dispersed
Cec05g2882 Cec-Chr5:38992546 Cec05g2240 Cec-Chr5:33863963 3.40E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29692 PF03106 WRKY 9.10E-26 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2882 - - - 0.0