Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g2882 | ATGGCGGTCGATCTGATGAGTTTTCCAAAGATGGATGATCAAATGGCTATACAGGAGGCTGCATCGCAAGGATTGAAGAGTATGGAGCATTTGATTCGTCTTCTTTCTCACAAGCAATCCTCAAGCCATGTTGATTGCTCTGATTTAACTGATGCAACCGTTTCCAAGTTCAAGAAAGTGATATCTCTCCTCAATCGGACCGGTCACGCTAGATTCCGGCGAGGTCCGGTTTCTTCGACATCCTCCTCGTCGTCCGGTTCATCTGCTCATCTCTCTTTTCCTCAAAATCAGGCGATGAATCTCACTCCTACTCCGTTTACTTCACCGGCCGCGGTTCCTGCTCCGCCGTTCACCGCTCCGGCTTCCGTCGCTCAGCCACAGGCGAAAGTCGTCGCTGTGGCGGCGAACATCCTCCAGTCGCAGCCTCAGAGCATGACTCTCGATTTCACTAGGCCGAATATTTTGAACTCAAATCCTAAGGGAACCGATTTGGAATTTTCTAAGGAGACCTTCAGCGTCTCGTCCAGCTCCTCGTTTATGTCCTCAGCCATCACCGGAGACGGAAGCGTATCCAACGGAAAGTTAGGAACGTCGATCTTCTTAGCACCAGCGCCGACTGCTTCCGGTGGTAAGCCGCCGCTCTCGGCGGCGCCTTACAAGAAGAGGTGTCACGAACACGATCATTCCGAAGATTTGTCTGGAAAATTCTCCGGGTCAACATCTGCTTCCGGCAAATGCCATTGCTCAAAGAGAAGAAAAAATCGTACGAAGAAGACGATTCGAGTCCCAGCGATTAGTTCAAAAATCGCAGATATTCCACCGGACGACTACTCGTGGAGGAAGTATGGTCAGAAGCCGATCAAAGGATCTCCATACCCACGGGGATATTACAAGTGTAGCACGATGAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAACGATCCGGCGATGTTGATTGTAACGTACGAAGGGGAGCACCGCCATACGCAGAGCTCGTTGCCGGAAAATATGGCGGCTGGAGTAGCTTTAGTTTTTGAGTCAACTTGA | 1056 | 50.95 | MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLIRLLSHKQSSSHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSSTSSSSSGSSAHLSFPQNQAMNLTPTPFTSPAAVPAPPFTAPASVAQPQAKVVAVAANILQSQPQSMTLDFTRPNILNSNPKGTDLEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDLSGKFSGSTSASGKCHCSKRRKNRTKKTIRVPAISSKIADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMAAGVALVFEST | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 38992546 | 38994190 | + | CePI673135_05g028820.1 | Cec05g2882 | 204685 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g2882 | 351 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 16 | 334 | IPR044810 | GO:0003700(InterPro) | |
Cec05g2882 | 351 | SMART | WRKY_cls | 273 | 333 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec05g2882 | 351 | MobiDBLite | consensus disorder prediction | 74 | 92 | - | - | |
Cec05g2882 | 351 | ProSiteProfiles | WRKY domain profile. | 268 | 334 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec05g2882 | 351 | Pfam | WRKY DNA -binding domain | 275 | 331 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec05g2882 | 351 | Gene3D | WRKY domain | 246 | 334 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec05g2882 | 351 | MobiDBLite | consensus disorder prediction | 72 | 92 | - | - | |
Cec05g2882 | 351 | FunFam | WRKY transcription factor 65 | 257 | 334 | - | - | |
Cec05g2882 | 351 | Pfam | Plant zinc cluster domain | 220 | 271 | IPR018872 | - | |
Cec05g2882 | 351 | SUPERFAMILY | WRKY DNA-binding domain | 271 | 333 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g1391 | Cec-Chr4:33561687 | Cec05g2882 | Cec-Chr5:38992546 | 2.90E-52 | dispersed | |
Cec05g2882 | Cec-Chr5:38992546 | Cec06g1579 | Cec-Chr6:29397387 | 1.10E-69 | dispersed | |
Cec05g2882 | Cec-Chr5:38992546 | Cec05g2240 | Cec-Chr5:33863963 | 3.40E-60 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29692 | PF03106 | WRKY | 9.10E-26 | CL0274 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g2882 | - | - | - | 0.0 |