Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2888 ATGGGTGATCTCGAGAATGATGAAATGGGTTTTAGGAATTCGAATGAAGGGTTAATGAATTGTCCATCAACAATGGCGATGGGGTCTTTCTATGGGTCGGGTTGGGATCCACTGGTTTCTTTAGGTCAAAGTGAGAATTTTGGGGCAGCTTCTTCAATGGTTTCCTCTCATGGCGAATTTTCCAATTCTTTTCCTGTTGTTTTGGAGAACCATGGAGGGAGTGGGACTGCACAACAAGGTGTTCAATATCCGACAGATTTGGAGATGAGTACGAAGTTGCCATGTTTTGGCAGTGGGAATTATTCAGACATGTTTGGTTCTTCTTTTGGTCTTGCTGGGCAGATTCTTGGTGGGTGTTCTTCAAATTACAGAAATGCACAAACATCACAAGAAAATTTACCATTATCTGGTGAAGAAACTGCTGTAGGATCACCAAATGGTAAAATCAGAAAACGAGCTCTTGGTTCCACTTTCCCATTTAGTCCAAATAAGAAATCTGAAGTGAAATTGAAGAAGGATGTTTCTGGAGACAGTTCCAGTACACAAGAAGAGAAGAATGCAGAAATGGAGCAAAACTTAGGTGGGAATTCACGTGGTAAGGCAACTGGAAAACAAACTAAAGAAAAATCTAATAATAGTGCTGAAGCTCCTAAGGAAAATTACATTCATGTTCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAACGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGGAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAATCACTGCAACAGCAGGTTGAGTTTTTGTCCATGAAACTTGCTACTGTCAACCCGGACGTGAATATCGATATTGAGAGGATTTTATCCAAAGATATTTTCCATGCACGAGGCAGCAATGGAACTGTTCTTGGATTTGATCCCGGGTTGAGCGCTGTTTCCCCAGTCCCTCCTCACCGAATGTTTCAGTTTCAAGGGACGATGTCGAATATGGCAACCACATCCACACAGTTTCCTCCTTTGCCTCAGACGATGTTAGAAAGCGATATTCAAAGTCTTCTTCAAATGGGATTCGACTCGGGTTCGGCCCTTGACAATTTGGGACCAAACGGGCGGTTGAAACCAGAGCCCTAA 1185 42.87 MGDLENDEMGFRNSNEGLMNCPSTMAMGSFYGSGWDPLVSLGQSENFGAASSMVSSHGEFSNSFPVVLENHGGSGTAQQGVQYPTDLEMSTKLPCFGSGNYSDMFGSSFGLAGQILGGCSSNYRNAQTSQENLPLSGEETAVGSPNGKIRKRALGSTFPFSPNKKSEVKLKKDVSGDSSSTQEEKNAEMEQNLGGNSRGKATGKQTKEKSNNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIERILSKDIFHARGSNGTVLGFDPGLSAVSPVPPHRMFQFQGTMSNMATTSTQFPPLPQTMLESDIQSLLQMGFDSGSALDNLGPNGRLKPEP 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39026225 39028051 - CePI673135_05g028880.1 Cec05g2888 204691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2888 394 MobiDBLite consensus disorder prediction 130 240 - -
Cec05g2888 394 SMART finulus 236 286 IPR011598 GO:0046983(InterPro)
Cec05g2888 394 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 98 356 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cec05g2888 394 MobiDBLite consensus disorder prediction 180 210 - -
Cec05g2888 394 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 295 IPR036638 GO:0046983(InterPro)
Cec05g2888 394 Pfam Helix-loop-helix DNA-binding domain 233 281 IPR011598 GO:0046983(InterPro)
Cec05g2888 394 Gene3D - 227 300 IPR036638 GO:0046983(InterPro)
Cec05g2888 394 MobiDBLite consensus disorder prediction 165 179 - -
Cec05g2888 394 CDD bHLH_AtBPE_like 220 305 - -
Cec05g2888 394 FunFam Basic helix-loop-helix transcription factor 227 299 - -
Cec05g2888 394 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 280 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2567 Cec-Chr5:36652382 Cec05g2888 Cec-Chr5:39026225 7.30E-44 dispersed
Cec05g2888 Cec-Chr5:39026225 Cec08g1734 Cec-Chr8:28459138 1.50E-48 dispersed
Cec05g2888 Cec-Chr5:39026225 Cec02g0524 Cec-Chr2:4933702 8.50E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29693 PF00010 HLH 4.00E-06 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2888 - - - 0.0