Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g2888 | ATGGGTGATCTCGAGAATGATGAAATGGGTTTTAGGAATTCGAATGAAGGGTTAATGAATTGTCCATCAACAATGGCGATGGGGTCTTTCTATGGGTCGGGTTGGGATCCACTGGTTTCTTTAGGTCAAAGTGAGAATTTTGGGGCAGCTTCTTCAATGGTTTCCTCTCATGGCGAATTTTCCAATTCTTTTCCTGTTGTTTTGGAGAACCATGGAGGGAGTGGGACTGCACAACAAGGTGTTCAATATCCGACAGATTTGGAGATGAGTACGAAGTTGCCATGTTTTGGCAGTGGGAATTATTCAGACATGTTTGGTTCTTCTTTTGGTCTTGCTGGGCAGATTCTTGGTGGGTGTTCTTCAAATTACAGAAATGCACAAACATCACAAGAAAATTTACCATTATCTGGTGAAGAAACTGCTGTAGGATCACCAAATGGTAAAATCAGAAAACGAGCTCTTGGTTCCACTTTCCCATTTAGTCCAAATAAGAAATCTGAAGTGAAATTGAAGAAGGATGTTTCTGGAGACAGTTCCAGTACACAAGAAGAGAAGAATGCAGAAATGGAGCAAAACTTAGGTGGGAATTCACGTGGTAAGGCAACTGGAAAACAAACTAAAGAAAAATCTAATAATAGTGCTGAAGCTCCTAAGGAAAATTACATTCATGTTCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAACGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGGAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAATCACTGCAACAGCAGGTTGAGTTTTTGTCCATGAAACTTGCTACTGTCAACCCGGACGTGAATATCGATATTGAGAGGATTTTATCCAAAGATATTTTCCATGCACGAGGCAGCAATGGAACTGTTCTTGGATTTGATCCCGGGTTGAGCGCTGTTTCCCCAGTCCCTCCTCACCGAATGTTTCAGTTTCAAGGGACGATGTCGAATATGGCAACCACATCCACACAGTTTCCTCCTTTGCCTCAGACGATGTTAGAAAGCGATATTCAAAGTCTTCTTCAAATGGGATTCGACTCGGGTTCGGCCCTTGACAATTTGGGACCAAACGGGCGGTTGAAACCAGAGCCCTAA | 1185 | 42.87 | MGDLENDEMGFRNSNEGLMNCPSTMAMGSFYGSGWDPLVSLGQSENFGAASSMVSSHGEFSNSFPVVLENHGGSGTAQQGVQYPTDLEMSTKLPCFGSGNYSDMFGSSFGLAGQILGGCSSNYRNAQTSQENLPLSGEETAVGSPNGKIRKRALGSTFPFSPNKKSEVKLKKDVSGDSSSTQEEKNAEMEQNLGGNSRGKATGKQTKEKSNNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIERILSKDIFHARGSNGTVLGFDPGLSAVSPVPPHRMFQFQGTMSNMATTSTQFPPLPQTMLESDIQSLLQMGFDSGSALDNLGPNGRLKPEP | 394 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 39026225 | 39028051 | - | CePI673135_05g028880.1 | Cec05g2888 | 204691 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g2888 | 394 | MobiDBLite | consensus disorder prediction | 130 | 240 | - | - | |
Cec05g2888 | 394 | SMART | finulus | 236 | 286 | IPR011598 | GO:0046983(InterPro) | |
Cec05g2888 | 394 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 98 | 356 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cec05g2888 | 394 | MobiDBLite | consensus disorder prediction | 180 | 210 | - | - | |
Cec05g2888 | 394 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 228 | 295 | IPR036638 | GO:0046983(InterPro) | |
Cec05g2888 | 394 | Pfam | Helix-loop-helix DNA-binding domain | 233 | 281 | IPR011598 | GO:0046983(InterPro) | |
Cec05g2888 | 394 | Gene3D | - | 227 | 300 | IPR036638 | GO:0046983(InterPro) | |
Cec05g2888 | 394 | MobiDBLite | consensus disorder prediction | 165 | 179 | - | - | |
Cec05g2888 | 394 | CDD | bHLH_AtBPE_like | 220 | 305 | - | - | |
Cec05g2888 | 394 | FunFam | Basic helix-loop-helix transcription factor | 227 | 299 | - | - | |
Cec05g2888 | 394 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 230 | 280 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec05g2567 | Cec-Chr5:36652382 | Cec05g2888 | Cec-Chr5:39026225 | 7.30E-44 | dispersed | |
Cec05g2888 | Cec-Chr5:39026225 | Cec08g1734 | Cec-Chr8:28459138 | 1.50E-48 | dispersed | |
Cec05g2888 | Cec-Chr5:39026225 | Cec02g0524 | Cec-Chr2:4933702 | 8.50E-36 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29693 | PF00010 | HLH | 4.00E-06 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g2888 | - | - | - | 0.0 |