Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g2889 | ATGGCTATGGAAGTTACTTCTGAGTCTCAGCAACATTCTCACTACCATTACCATAGCCAGGCAAGTTCAGCAGGAGTTGTCTCTAACACCATGTCAAATAGCTTCTTAGCTTCTCACCACTCCAATGGAGATTTTTATTTTTCTCCCTTGTCTGTAATGCCACTTAAGTCAGATGGTTCTCTTTGTATCATGGAATCAATCAGCGCATCACAACCTCAAGAAACATTGCCAAATATCTCACCAAAATTGGAGGACTTTCTTGGTGGTGCGACTCATGGAAAAGAGGCCACAACTCTAAGCTTAGACAACATATATTACAATCAAAATAATGAGGTTGATTCAGAGAGTCAACATTCTTTGGATCTGTTTAAGCAACAAGAGCAAATACATATTCTTTTTCATTCTCAGCGATATTATTCTGGACTGCTCCAGTATCCTACTGAGGATCCTAAGAAGGAGTCTCATATTGCAAGCTGTTATTCTGAAATTCGACAAGATATGGAGCAGCGGATAAATGGCTGCTGCTTTGGAGGGATGAATTGCCAAGATTTGCAGCCACTTAGCTTGTCCACGAGTCCTAATTCTCAGTCTAGTTGTGTTACTGCTCCAAGCCAAATTTCTCAACCTGGACCAGCCACCATGGAAACAAAGAAAAGGGCTTTCGACAATCGAAAGCAGTCGGTCCATCGGAAGTCAATCGACACGTTTGGACTAAGAACTTCGCAGTACAGAGGTGTGACAAGGCATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGACAATAGTTGTAAGAAGGAAGGTCAAACGAGGAAAGGAAGACAAGTGTATCTTGGTGGCTATGATATGGAGGAAAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCAACACATTTAAACTTCCCGCTAAAGAACTATCAACTTCAAATTGAAGAAATGAAGAATATGAACCGTCAAGAATACGTTGCACACCTGAGAAGGAAAAGCAATGGATTCTCCAGGGGAGCTTCCGTATACAGGGGAGTAACTAGACATCATCAACATGGGAGATGGCAAGCTCGAATCGGAAGAGTCGCAGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCTGCAGAAGCATATGACATAGCAGCTATCAAGTTTCGCGGTGTAAATGCTATTACAAACTTCGACACATCAAGGTACAATGTAGAAAGGATCATAGCAAGCAGTAGCCTCCTTTCAGGAGAGTTTGCGAGGCGAAACACAGAACAAAAACCAACCCACACCATCAAACATAAAGATCCAACACAGAACATTGATAAAATCGATGATCCCTCGAAGATATCAAACAACTTGGACCGGAAGGCAGTATTCAACGACAACCCGATATTGGATCCAAGTGCAATGGTTGGATCCACAGACCAAAAGTGCATGAAATCTAAATGA | 1461 | 42.44 | MAMEVTSESQQHSHYHYHSQASSAGVVSNTMSNSFLASHHSNGDFYFSPLSVMPLKSDGSLCIMESISASQPQETLPNISPKLEDFLGGATHGKEATTLSLDNIYYNQNNEVDSESQHSLDLFKQQEQIHILFHSQRYYSGLLQYPTEDPKKESHIASCYSEIRQDMEQRINGCCFGGMNCQDLQPLSLSTSPNSQSSCVTAPSQISQPGPATMETKKRAFDNRKQSVHRKSIDTFGLRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKNYQLQIEEMKNMNRQEYVAHLRRKSNGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGVNAITNFDTSRYNVERIIASSSLLSGEFARRNTEQKPTHTIKHKDPTQNIDKIDDPSKISNNLDRKAVFNDNPILDPSAMVGSTDQKCMKSK | 486 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 39038248 | 39040617 | - | CePI673135_05g028890.1 | Cec05g2889 | 204692 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g2889 | 486 | CDD | AP2 | 241 | 308 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2889 | 486 | MobiDBLite | consensus disorder prediction | 425 | 451 | - | - | |
Cec05g2889 | 486 | SUPERFAMILY | DNA-binding domain | 343 | 403 | IPR016177 | GO:0003677(InterPro) | |
Cec05g2889 | 486 | ProSiteProfiles | AP2/ERF domain profile. | 242 | 308 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2889 | 486 | Pfam | AP2 domain | 242 | 300 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2889 | 486 | Pfam | AP2 domain | 343 | 394 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2889 | 486 | CDD | AP2 | 343 | 404 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2889 | 486 | FunFam | AP2-like ethylene-responsive transcription factor | 343 | 404 | - | - | |
Cec05g2889 | 486 | Gene3D | AP2/ERF domain | 241 | 310 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2889 | 486 | Gene3D | AP2/ERF domain | 344 | 404 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2889 | 486 | SMART | rav1_2 | 242 | 314 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2889 | 486 | SMART | rav1_2 | 344 | 408 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2889 | 486 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 241 | 310 | - | - | |
Cec05g2889 | 486 | MobiDBLite | consensus disorder prediction | 426 | 451 | - | - | |
Cec05g2889 | 486 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cec05g2889 | 486 | SUPERFAMILY | DNA-binding domain | 241 | 309 | IPR016177 | GO:0003677(InterPro) | |
Cec05g2889 | 486 | ProSiteProfiles | AP2/ERF domain profile. | 344 | 402 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2889 | 486 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 164 | 436 | - | - | |
Cec05g2889 | 486 | PRINTS | Ethylene responsive element binding protein signature | 384 | 404 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g2889 | 486 | PRINTS | Ethylene responsive element binding protein signature | 243 | 254 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g1474 | Cec-Chr4:34282342 | Cec05g2889 | Cec-Chr5:39038248 | 1.10E-128 | dispersed | |
Cec05g2889 | Cec-Chr5:39038248 | Cec07g1525 | Cec-Chr7:30873012 | 1.40E-101 | dispersed | |
Cec05g2889 | Cec-Chr5:39038248 | Cec08g1733 | Cec-Chr8:28445373 | 3.00E-139 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29694 | PF00847 | AP2 | 1.00E-13 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g2889 | K09285 | - | csv:101212143 | 773.081 |