Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2889 ATGGCTATGGAAGTTACTTCTGAGTCTCAGCAACATTCTCACTACCATTACCATAGCCAGGCAAGTTCAGCAGGAGTTGTCTCTAACACCATGTCAAATAGCTTCTTAGCTTCTCACCACTCCAATGGAGATTTTTATTTTTCTCCCTTGTCTGTAATGCCACTTAAGTCAGATGGTTCTCTTTGTATCATGGAATCAATCAGCGCATCACAACCTCAAGAAACATTGCCAAATATCTCACCAAAATTGGAGGACTTTCTTGGTGGTGCGACTCATGGAAAAGAGGCCACAACTCTAAGCTTAGACAACATATATTACAATCAAAATAATGAGGTTGATTCAGAGAGTCAACATTCTTTGGATCTGTTTAAGCAACAAGAGCAAATACATATTCTTTTTCATTCTCAGCGATATTATTCTGGACTGCTCCAGTATCCTACTGAGGATCCTAAGAAGGAGTCTCATATTGCAAGCTGTTATTCTGAAATTCGACAAGATATGGAGCAGCGGATAAATGGCTGCTGCTTTGGAGGGATGAATTGCCAAGATTTGCAGCCACTTAGCTTGTCCACGAGTCCTAATTCTCAGTCTAGTTGTGTTACTGCTCCAAGCCAAATTTCTCAACCTGGACCAGCCACCATGGAAACAAAGAAAAGGGCTTTCGACAATCGAAAGCAGTCGGTCCATCGGAAGTCAATCGACACGTTTGGACTAAGAACTTCGCAGTACAGAGGTGTGACAAGGCATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGACAATAGTTGTAAGAAGGAAGGTCAAACGAGGAAAGGAAGACAAGTGTATCTTGGTGGCTATGATATGGAGGAAAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCAACACATTTAAACTTCCCGCTAAAGAACTATCAACTTCAAATTGAAGAAATGAAGAATATGAACCGTCAAGAATACGTTGCACACCTGAGAAGGAAAAGCAATGGATTCTCCAGGGGAGCTTCCGTATACAGGGGAGTAACTAGACATCATCAACATGGGAGATGGCAAGCTCGAATCGGAAGAGTCGCAGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCTGCAGAAGCATATGACATAGCAGCTATCAAGTTTCGCGGTGTAAATGCTATTACAAACTTCGACACATCAAGGTACAATGTAGAAAGGATCATAGCAAGCAGTAGCCTCCTTTCAGGAGAGTTTGCGAGGCGAAACACAGAACAAAAACCAACCCACACCATCAAACATAAAGATCCAACACAGAACATTGATAAAATCGATGATCCCTCGAAGATATCAAACAACTTGGACCGGAAGGCAGTATTCAACGACAACCCGATATTGGATCCAAGTGCAATGGTTGGATCCACAGACCAAAAGTGCATGAAATCTAAATGA 1461 42.44 MAMEVTSESQQHSHYHYHSQASSAGVVSNTMSNSFLASHHSNGDFYFSPLSVMPLKSDGSLCIMESISASQPQETLPNISPKLEDFLGGATHGKEATTLSLDNIYYNQNNEVDSESQHSLDLFKQQEQIHILFHSQRYYSGLLQYPTEDPKKESHIASCYSEIRQDMEQRINGCCFGGMNCQDLQPLSLSTSPNSQSSCVTAPSQISQPGPATMETKKRAFDNRKQSVHRKSIDTFGLRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKNYQLQIEEMKNMNRQEYVAHLRRKSNGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGVNAITNFDTSRYNVERIIASSSLLSGEFARRNTEQKPTHTIKHKDPTQNIDKIDDPSKISNNLDRKAVFNDNPILDPSAMVGSTDQKCMKSK 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39038248 39040617 - CePI673135_05g028890.1 Cec05g2889 204692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2889 486 CDD AP2 241 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2889 486 MobiDBLite consensus disorder prediction 425 451 - -
Cec05g2889 486 SUPERFAMILY DNA-binding domain 343 403 IPR016177 GO:0003677(InterPro)
Cec05g2889 486 ProSiteProfiles AP2/ERF domain profile. 242 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2889 486 Pfam AP2 domain 242 300 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2889 486 Pfam AP2 domain 343 394 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2889 486 CDD AP2 343 404 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2889 486 FunFam AP2-like ethylene-responsive transcription factor 343 404 - -
Cec05g2889 486 Gene3D AP2/ERF domain 241 310 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2889 486 Gene3D AP2/ERF domain 344 404 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2889 486 SMART rav1_2 242 314 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2889 486 SMART rav1_2 344 408 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2889 486 FunFam AP2-like ethylene-responsive transcription factor ANT 241 310 - -
Cec05g2889 486 MobiDBLite consensus disorder prediction 426 451 - -
Cec05g2889 486 MobiDBLite consensus disorder prediction 1 20 - -
Cec05g2889 486 SUPERFAMILY DNA-binding domain 241 309 IPR016177 GO:0003677(InterPro)
Cec05g2889 486 ProSiteProfiles AP2/ERF domain profile. 344 402 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2889 486 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 164 436 - -
Cec05g2889 486 PRINTS Ethylene responsive element binding protein signature 384 404 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g2889 486 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1474 Cec-Chr4:34282342 Cec05g2889 Cec-Chr5:39038248 1.10E-128 dispersed
Cec05g2889 Cec-Chr5:39038248 Cec07g1525 Cec-Chr7:30873012 1.40E-101 dispersed
Cec05g2889 Cec-Chr5:39038248 Cec08g1733 Cec-Chr8:28445373 3.00E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29694 PF00847 AP2 1.00E-13 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2889 K09285 - csv:101212143 773.081