Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2899 ATGCCGATGTACCAGCCCTCCTGTCGAAGAAGAGAGCCCGATTCGGAGCTGGGTTTAGGTGGTGGTGGGCAAGTTCTTGATGTGGAAACCGCCGTGAAAGATGGTATTCTTGGTGGCGGTGGCGGTGGAGGCGGTGGGTTAATTTGCGAGGGTGGAATAACTGAGAAATTGGATCTGAAGGAGATAGTGGAGGAGCTTCAGAATATTGAGGTTCCTTCGGTGTTTATTTGCCCAATTTCATTGGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAGACCTACGAACGATCCAACATCTTGAAATGGTTCTCTCTTGGCCATATCACATGCCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACTCCCAATAACACTCTTCACCATCTCATTTACAGTTGGTTTTCCCAAAAGTATTTGGCCATGAAGAAGAGGTCTGAGGATGTGCAGGGGAGAGCTCTTGAGCTCTTAGACACATTGAAGAAGGTCAAGGGCCAAGCTAGAGTCCGAGCTTTGAAGGATCTTCGTCAAGTTGTAGCTTCAAATTCGGCAAAGAACACTGTGGAAGGCAATGGTGGTGTTGTTTTGATTTCCTCTTTGTTGGGTCCTTTTACATCGCACGCGGTTGGCTCCGAAGCCATTGGGATTTTGGTGAACTTGGATCTCGATGCCGAGTCGAGGAGAAGCCTTGTTCAACCTGCCAAGATTTCGTTAATGGTGGACATGTTGAACGAGGGATCCACAGATACCAAAATCAACTGCACAAGATTGATTGAAACGTTGCTCGATGGGGATGATTGTGGAGCGAACACTGTCTCGAGTTTAAGTCTCTTGGTTGGATTGTTAAGATTAATCAAAGAAAAGAAACACCCAAATGGTGTTCTTGCTGGGTTAAAGTTGCTAAAAGTTCTGTGCTCCCAAGAACCAGTGAGGAACTCAGTAGTGAGCATTGGGGCAATACCGCAATTGATCGAAATTCTCCCGAATTTCGACCCCGAGTGTTTGGAATTAGCCCTTCATGTATTGGACTCACTCTCATCCCTCTCAGAGGGCAGGGTGGCCTTGAAAGATTGCCCCAAAACCATTCCAAACTTAGTCAAATTGTTAATGAGAGTCTCAGAGAGCTGCACTCAGCTGGCTTTGTCAATCCTATGGGCAGTCTGTAAACTCGCCCCTGAAGAATGTGCATCCCAAGCTGTGGAAGCAGGCTTAGCAGCCAAGCTTCTTTTGGTGATTCAGAGCGGTTGCAACCCCGTTCTGAAACAACGCTCCGCCGAGCTTCTGAAGCTCTGCAGCTTAAATTACACAGCAACCCTATTCATATCCAAGTGTAAGCTTACAAGGACAATACAATAA 1365 47.03 MPMYQPSCRRREPDSELGLGGGGQVLDVETAVKDGILGGGGGGGGGLICEGGITEKLDLKEIVEELQNIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHITCPTTMQELWDDSITPNNTLHHLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKDLRQVVASNSAKNTVEGNGGVVLISSLLGPFTSHAVGSEAIGILVNLDLDAESRRSLVQPAKISLMVDMLNEGSTDTKINCTRLIETLLDGDDCGANTVSSLSLLVGLLRLIKEKKHPNGVLAGLKLLKVLCSQEPVRNSVVSIGAIPQLIEILPNFDPECLELALHVLDSLSSLSEGRVALKDCPKTIPNLVKLLMRVSESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39103859 39105223 - CePI673135_05g028990.1 Cec05g2899 204702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2899 454 CDD RING-Ubox_PUB 72 122 IPR045210 -
Cec05g2899 454 MobiDBLite consensus disorder prediction 1 22 - -
Cec05g2899 454 Gene3D - 144 447 IPR011989 -
Cec05g2899 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 143 IPR013083 -
Cec05g2899 454 SMART Ubox_2 74 137 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec05g2899 454 SUPERFAMILY RING/U-box 67 141 - -
Cec05g2899 454 PANTHER WDSAM1 PROTEIN 67 449 IPR045185 GO:0061630(InterPro)
Cec05g2899 454 SUPERFAMILY ARM repeat 240 437 IPR016024 -
Cec05g2899 454 Pfam U-box domain 71 141 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec05g2899 454 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2899 Cec-Chr5:39103859 Cec08g1724 Cec-Chr8:28355322 2.80E-163 dispersed
Cec05g2899 Cec-Chr5:39103859 Cec04g1242 Cec-Chr4:31977467 1.20E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2899 - - - 0.0