Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2903 ATGAGCAGTTTCTCCTTGAAAAGCTTCTCGTGGAGGAAATCGAAATCCTCGAAATCGGATTCCTCCCATTCCTTTTCGTCGTCGTCGTCGTCGTCGGAACAGCGGTTTCTGACGGAAAATATGGGAACTCTGAGAGTGCCGGAGACCGTTCCTTCTCCCGCTGAGGATTGTGATAGGCTCAAGAAAGCTTTTGATGGATGGGGAACGGATGAGAAGACATTGATAAGGATATTAGGACAAAGAAATGCAGCTCAAAGGAAAGCAATTAGAGAGACTTATCTCGAGCTATACAATGAGTCGTTAATTGATCGCATCAACGTTGAACTCTCTGGTGACTTTAGAAAAGCGGCGATTTTGTGGGCAAATGATCCTGCAGAGAGGGATGCAAGATTGGCAAATGAAGCTTTGAGGTCATATAAGAAAGGCATCCATGAGCTTCAAGTATTAGTGGAGATAGCCTGTGCCACATCTCCTTACCATCTGATGTCAGTAAGGCAGGCCTACTGTTCTCTCTTTGATTGCTCGCTTGAAGAAGACATTTTCTCCACAATCTCCATGCCTCATAGAAAGCTTCTTGTTGGTGTGGTGAGTTCCTTCAGGCATGATAAAGAGGTGGTGGACAGTATTGTTGCTGATTCAGAAGCCGATTTATTACACGATGCTATCAAATCGAAGCAATTAAACCGCAGTGGCGTCATTTGGATACTCAGCACAAGGAATTTCTTTCAGCTTAGAGCAACCTTTGCATGCTATAAGCAAAAGTATGGAAACCCTATTGACCAGGACATTGTGAAATGTGGAACTAGTGATTTAGAATCTCTCTTCAAAATGGCGATTTGGTGCATTGACACTCCTGAAAAACACTTTGCTAGGGTAATCAACAAGGCCATTGTTGGGCTTGGGACAGATGAAGATTCTCTAACCAGAGCCATTGTATGTCGAGCTGAGATAGACACAATGAAAATTAGAGAAGTGTATTCCAACATGTTCAAAGGCAAGCTCGATGACGACGTTATCGGCGACACATCTGGAGACTACAAGGACATGTTGATGATCTTGCTTGGAGCTAAAGTTTGA 1077 43.64 MSSFSLKSFSWRKSKSSKSDSSHSFSSSSSSSEQRFLTENMGTLRVPETVPSPAEDCDRLKKAFDGWGTDEKTLIRILGQRNAAQRKAIRETYLELYNESLIDRINVELSGDFRKAAILWANDPAERDARLANEALRSYKKGIHELQVLVEIACATSPYHLMSVRQAYCSLFDCSLEEDIFSTISMPHRKLLVGVVSSFRHDKEVVDSIVADSEADLLHDAIKSKQLNRSGVIWILSTRNFFQLRATFACYKQKYGNPIDQDIVKCGTSDLESLFKMAIWCIDTPEKHFARVINKAIVGLGTDEDSLTRAIVCRAEIDTMKIREVYSNMFKGKLDDDVIGDTSGDYKDMLMILLGAKV 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39133257 39137555 - CePI673135_05g029030.1 Cec05g2903 204706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2903 358 ProSiteProfiles Annexin repeat profile. 284 355 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 FunFam Annexin 123 196 - -
Cec05g2903 358 SMART annex3 228 278 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 SMART annex3 301 353 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 SMART annex3 147 195 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 SMART annex3 68 120 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 MobiDBLite consensus disorder prediction 20 37 - -
Cec05g2903 358 Gene3D Annexin 123 196 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 ProSiteProfiles Annexin repeat profile. 51 122 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 Gene3D Annexin 285 356 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 FunFam Annexin 209 283 - -
Cec05g2903 358 SUPERFAMILY Annexin 42 355 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 ProSiteProfiles Annexin repeat profile. 123 197 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 MobiDBLite consensus disorder prediction 1 37 - -
Cec05g2903 358 FunFam Annexin 41 122 - -
Cec05g2903 358 PANTHER ANNEXIN 41 355 - GO:0005509(PANTHER)|GO:0005737(PANTHER)
Cec05g2903 358 Pfam Annexin 289 352 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 Pfam Annexin 147 193 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 Pfam Annexin 214 275 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 Pfam Annexin 56 118 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 Gene3D Annexin 35 122 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 Gene3D Annexin 209 283 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 ProSitePatterns Annexin repeat signature. 301 353 IPR018252 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 PRINTS Plant annexin signature 162 176 IPR009118 -
Cec05g2903 358 PRINTS Plant annexin signature 204 224 IPR009118 -
Cec05g2903 358 PRINTS Plant annexin signature 269 287 IPR009118 -
Cec05g2903 358 PRINTS Annexin family signature 297 317 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 PRINTS Annexin family signature 341 354 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 PRINTS Annexin family signature 105 121 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 PRINTS Annexin family signature 65 87 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cec05g2903 358 FunFam Annexin 284 356 - -
Cec05g2903 358 ProSiteProfiles Annexin repeat profile. 207 280 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2903 K17098 - - csv:101221769 608.216
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2903 Cec-Chr5:39133257 Cec10g0889 Cec-Chr10:19686279 2.20E-67 dispersed
Cec05g2903 Cec-Chr5:39133257 Cec05g2905 Cec-Chr5:39152086 8.20E-62 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g546 . . . . . . . Bma15g00014 . . . . . . . . . . . . . . . . Cla05g02669 Cam05g2866 Cec05g2903 Cco05g2935 Clacu05g2870 Cmu05g2716 Cre05g2833 Cone13ag0722 Cone19ag0721 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004951 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 2 0 33