Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g2910 | ATGCTCTTTATTGTCGTATCACTACCTAAGTTGCCGTCTACCCAGATTTCTTTGGTGGGGTTCTCATTATCTTTTGAGGTATTTCACGTTTTCTTTGATTTCTTCTTTTCCTGGGATTTGGGCTGTTCTGATTTGGGGTTCTTGTTAATGGGTCTTTTTTGTCTTTCTGGGATGCTTTTGTTTTCGGATGTTCTATTCTGCATTCCGTTTCTGGGTTGTCTCAATGTGACTTTGGATGTTTCTGGTTCTTTGATTGGTTTACTTTGTGTTGCTGCTGTTCTATTATCTATGGGCTTCAATTTTCTTTTAGTTAAGTTTTTGTATGGAGTTCTCGGTTTAGGAAGTTTGCGGGGACCTCACCTCATACTGAAAGCCCCTAGAGCTTTACCTGAAGCTGTCCTAATCGGAACTTCTGGCGAGGGAAACCTTGTCTCTATGCACTCTAGTGTTGTTGAGATATCTAAGCTTCACCATAAGAATCCAGAACATGCAATCAGGGGCATTCTATTGATAAAAATGTCATCTGCCAATCCTTATTTTGATGACATTCGGACCAAACCTGAGGTTATTGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAACCTAACGTAGCTGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCAGGTTGCAAGCCTAGGGTGCACAACCGATGTCCAACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTAGGCATATACCCATACTACAGCAAGCTGAAACACGAATCTCAATGTGTGTATCGGCCCTATAACTGTCCATATGCGGGATCGGAATGCACAGTTATTGGCGATATCCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGAAGCACTTTCAATCACCGGTATGTCAAGTCAAATCCGCAAGAGGTTGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCTTTCTTGCGGTTTATGGGCGATGATAATGAAGCAAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGATGGTCTTATTATCCAACGTAATATGGCACTGTTCTTCTCTGGGGGAGATCGGAAAGAATTGAAACTCAGGGTAACTGAGAACAAGCTCGGACATGAATTGTATTTATCTTGGGATCAATCTGTCAGAATTTTCCTAGGCCTATTTGAGATGTCACTCAAGTTACACCATATTGATTTAAAGGGTGGTTCAGGTACCCAGAAAAGGCTAAAGGATCTCTCGGCTCAGTCTGCCAATAAGTACTGTGCCGATTGTGGTTCTCCAGATCCAAAATGGGTATCTGTGAGTTTTGGGGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCAGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGAGTGTAGGTGGAAATACTGCCGTAAACAAAAAGTATGAAGTTTGCATCCCAGATGGCAATAAAAAGCCAAAACCAGACTCCTCCATAGAGGAGCGTTTTGATTTTATAAGGAAAAAATATGAGCTGCTGCAATTTGCAAGTCTAGACGATCAGTTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATCACTTTCGCACAGCGCTTCCAGTACTGATGTAAACCTAGAAAGGAGGAATTATGAAAAACTACCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACATAGGAACTGCAAGAAGGGAAATGCAAATGCATTGGTATTAAGCAGCTCAATGGCGGGTATGATTGAATTCGTTGGTTTAATCAAGGTCAACGTGGTTAGAGGAACCAATTTAGCTGTCAGGGATGTCGTGACGAGTGATCCATATGTAATTCTCTCCTTGGGCCACCAATCAGTGAAGACACGAGTTATAAAGAGTAGTTTGAATCCAGTCTGGAATGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGTGAAGCAGAAATCGATATCAATCCACTGCTCACAGCAGCCCGAGCCTGCGAGAGGTCCACAATCAGTGAACCAATGCAGTTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTAGATGGGAAGATCCGACAAGACATCTCTTTGAAGCTGCAGAACGTCGAGCGGGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG | 2604 | 42.97 | MLFIVVSLPKLPSTQISLVGFSLSFEVFHVFFDFFFSWDLGCSDLGFLLMGLFCLSGMLLFSDVLFCIPFLGCLNVTLDVSGSLIGLLCVAAVLLSMGFNFLLVKFLYGVLGLGSLRGPHLILKAPRALPEAVLIGTSGEGNLVSMHSSVVEISKLHHKNPEHAIRGILLIKMSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTENKLGHELYLSWDQSVRIFLGLFEMSLKLHHIDLKGGSGTQKRLKDLSAQSANKYCADCGSPDPKWVSVSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSVGGNTAVNKKYEVCIPDGNKKPKPDSSIEERFDFIRKKYELLQFASLDDQFFCPFPPPQKRNSSLSHSASSTDVNLERRNYEKLPTKTRIGSAFRNSWGRKDSEHRNCKKGNANALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGHQSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTISEPMQLGKWVASKENTLAKDGIISLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ | 867 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 39200129 | 39212215 | + | CePI673135_05g029100.1 | Cec05g2910 | 204713 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g2910 | 867 | SMART | C2_3c | 712 | 807 | IPR000008 | - | |
Cec05g2910 | 867 | SUPERFAMILY | RING/U-box | 223 | 269 | - | - | |
Cec05g2910 | 867 | Gene3D | C2 domain | 710 | 864 | IPR035892 | - | |
Cec05g2910 | 867 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 193 | 280 | IPR013083 | - | |
Cec05g2910 | 867 | SUPERFAMILY | TRAF domain-like | 282 | 470 | - | - | |
Cec05g2910 | 867 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 338 | 470 | - | - | |
Cec05g2910 | 867 | Pfam | Sina, TRAF-like domain | 373 | 470 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Cec05g2910 | 867 | ProSiteProfiles | Zinc finger RING-type profile. | 229 | 265 | IPR001841 | - | |
Cec05g2910 | 867 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 511 | 626 | IPR037278 | - | |
Cec05g2910 | 867 | ProSiteProfiles | Zinc finger SIAH-type profile. | 282 | 342 | IPR013010 | GO:0008270(InterPro) | |
Cec05g2910 | 867 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 710 | 804 | IPR035892 | - | |
Cec05g2910 | 867 | PRINTS | HIV Rev interacting protein signature | 563 | 584 | IPR001164 | GO:0005096(InterPro) | |
Cec05g2910 | 867 | PRINTS | HIV Rev interacting protein signature | 542 | 559 | IPR001164 | GO:0005096(InterPro) | |
Cec05g2910 | 867 | PRINTS | HIV Rev interacting protein signature | 523 | 542 | IPR001164 | GO:0005096(InterPro) | |
Cec05g2910 | 867 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 281 | 337 | IPR013083 | - | |
Cec05g2910 | 867 | FunFam | stromal membrane-associated protein 1 isoform X1 | 501 | 631 | - | - | |
Cec05g2910 | 867 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 281 | 337 | - | - | |
Cec05g2910 | 867 | Pfam | Sina, zinc finger | 278 | 353 | - | - | |
Cec05g2910 | 867 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 338 | 470 | IPR008974 | GO:0005515(InterPro) | |
Cec05g2910 | 867 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 507 | 867 | IPR044518 | GO:0005096(InterPro)|GO:0005543(InterPro) | |
Cec05g2910 | 867 | Pfam | Putative GTPase activating protein for Arf | 512 | 626 | IPR001164 | GO:0005096(InterPro) | |
Cec05g2910 | 867 | CDD | Sina | 343 | 470 | - | - | |
Cec05g2910 | 867 | Gene3D | Arf GTPase activating protein | 500 | 632 | IPR038508 | - | |
Cec05g2910 | 867 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 229 | 264 | IPR049548 | - | |
Cec05g2910 | 867 | CDD | C2_ArfGAP | 710 | 854 | - | - | |
Cec05g2910 | 867 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 511 | 625 | IPR001164 | GO:0005096(InterPro) | |
Cec05g2910 | 867 | Pfam | C2 domain | 712 | 800 | IPR000008 | - | |
Cec05g2910 | 867 | CDD | RING-HC_SIAHs | 227 | 265 | - | - | |
Cec05g2910 | 867 | SMART | arf_gap_3 | 511 | 632 | IPR001164 | GO:0005096(InterPro) | |
Cec05g2910 | 867 | ProSiteProfiles | C2 domain profile. | 693 | 809 | IPR000008 | - | |
Cec05g2910 | 867 | CDD | ArfGap | 514 | 620 | - | - | |
Cec05g2910 | 867 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD12 | 709 | 867 | - | - | |
Cec05g2910 | 867 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 187 | 280 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec01g0781 | Cec-Chr1:8605719 | Cec05g2910 | Cec-Chr5:39200129 | 2.80E-167 | dispersed | |
Cec01g0783 | Cec-Chr1:8621012 | Cec05g2910 | Cec-Chr5:39200129 | 1.40E-138 | dispersed | |
Cec04g2223 | Cec-Chr4:40002986 | Cec05g2910 | Cec-Chr5:39200129 | 2.40E-87 | dispersed | |
Cec05g2910 | Cec-Chr5:39200129 | Cec06g0130 | Cec-Chr6:1279843 | 3.90E-126 | dispersed | |
Cec05g2910 | Cec-Chr5:39200129 | Cec03g0789 | Cec-Chr3:8998241 | 2.30E-89 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g2910 | K04506 | - | csv:101221541 | 711.064 |