Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2910 ATGCTCTTTATTGTCGTATCACTACCTAAGTTGCCGTCTACCCAGATTTCTTTGGTGGGGTTCTCATTATCTTTTGAGGTATTTCACGTTTTCTTTGATTTCTTCTTTTCCTGGGATTTGGGCTGTTCTGATTTGGGGTTCTTGTTAATGGGTCTTTTTTGTCTTTCTGGGATGCTTTTGTTTTCGGATGTTCTATTCTGCATTCCGTTTCTGGGTTGTCTCAATGTGACTTTGGATGTTTCTGGTTCTTTGATTGGTTTACTTTGTGTTGCTGCTGTTCTATTATCTATGGGCTTCAATTTTCTTTTAGTTAAGTTTTTGTATGGAGTTCTCGGTTTAGGAAGTTTGCGGGGACCTCACCTCATACTGAAAGCCCCTAGAGCTTTACCTGAAGCTGTCCTAATCGGAACTTCTGGCGAGGGAAACCTTGTCTCTATGCACTCTAGTGTTGTTGAGATATCTAAGCTTCACCATAAGAATCCAGAACATGCAATCAGGGGCATTCTATTGATAAAAATGTCATCTGCCAATCCTTATTTTGATGACATTCGGACCAAACCTGAGGTTATTGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAACCTAACGTAGCTGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCAGGTTGCAAGCCTAGGGTGCACAACCGATGTCCAACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTAGGCATATACCCATACTACAGCAAGCTGAAACACGAATCTCAATGTGTGTATCGGCCCTATAACTGTCCATATGCGGGATCGGAATGCACAGTTATTGGCGATATCCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGAAGCACTTTCAATCACCGGTATGTCAAGTCAAATCCGCAAGAGGTTGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCTTTCTTGCGGTTTATGGGCGATGATAATGAAGCAAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGATGGTCTTATTATCCAACGTAATATGGCACTGTTCTTCTCTGGGGGAGATCGGAAAGAATTGAAACTCAGGGTAACTGAGAACAAGCTCGGACATGAATTGTATTTATCTTGGGATCAATCTGTCAGAATTTTCCTAGGCCTATTTGAGATGTCACTCAAGTTACACCATATTGATTTAAAGGGTGGTTCAGGTACCCAGAAAAGGCTAAAGGATCTCTCGGCTCAGTCTGCCAATAAGTACTGTGCCGATTGTGGTTCTCCAGATCCAAAATGGGTATCTGTGAGTTTTGGGGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCAGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGAGTGTAGGTGGAAATACTGCCGTAAACAAAAAGTATGAAGTTTGCATCCCAGATGGCAATAAAAAGCCAAAACCAGACTCCTCCATAGAGGAGCGTTTTGATTTTATAAGGAAAAAATATGAGCTGCTGCAATTTGCAAGTCTAGACGATCAGTTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATCACTTTCGCACAGCGCTTCCAGTACTGATGTAAACCTAGAAAGGAGGAATTATGAAAAACTACCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACATAGGAACTGCAAGAAGGGAAATGCAAATGCATTGGTATTAAGCAGCTCAATGGCGGGTATGATTGAATTCGTTGGTTTAATCAAGGTCAACGTGGTTAGAGGAACCAATTTAGCTGTCAGGGATGTCGTGACGAGTGATCCATATGTAATTCTCTCCTTGGGCCACCAATCAGTGAAGACACGAGTTATAAAGAGTAGTTTGAATCCAGTCTGGAATGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGTGAAGCAGAAATCGATATCAATCCACTGCTCACAGCAGCCCGAGCCTGCGAGAGGTCCACAATCAGTGAACCAATGCAGTTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTAGATGGGAAGATCCGACAAGACATCTCTTTGAAGCTGCAGAACGTCGAGCGGGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG 2604 42.97 MLFIVVSLPKLPSTQISLVGFSLSFEVFHVFFDFFFSWDLGCSDLGFLLMGLFCLSGMLLFSDVLFCIPFLGCLNVTLDVSGSLIGLLCVAAVLLSMGFNFLLVKFLYGVLGLGSLRGPHLILKAPRALPEAVLIGTSGEGNLVSMHSSVVEISKLHHKNPEHAIRGILLIKMSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTENKLGHELYLSWDQSVRIFLGLFEMSLKLHHIDLKGGSGTQKRLKDLSAQSANKYCADCGSPDPKWVSVSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSVGGNTAVNKKYEVCIPDGNKKPKPDSSIEERFDFIRKKYELLQFASLDDQFFCPFPPPQKRNSSLSHSASSTDVNLERRNYEKLPTKTRIGSAFRNSWGRKDSEHRNCKKGNANALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGHQSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTISEPMQLGKWVASKENTLAKDGIISLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39200129 39212215 + CePI673135_05g029100.1 Cec05g2910 204713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2910 867 SMART C2_3c 712 807 IPR000008 -
Cec05g2910 867 SUPERFAMILY RING/U-box 223 269 - -
Cec05g2910 867 Gene3D C2 domain 710 864 IPR035892 -
Cec05g2910 867 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 280 IPR013083 -
Cec05g2910 867 SUPERFAMILY TRAF domain-like 282 470 - -
Cec05g2910 867 FunFam E3 ubiquitin-protein ligase SINAT5-like 338 470 - -
Cec05g2910 867 Pfam Sina, TRAF-like domain 373 470 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cec05g2910 867 ProSiteProfiles Zinc finger RING-type profile. 229 265 IPR001841 -
Cec05g2910 867 SUPERFAMILY ArfGap/RecO-like zinc finger 511 626 IPR037278 -
Cec05g2910 867 ProSiteProfiles Zinc finger SIAH-type profile. 282 342 IPR013010 GO:0008270(InterPro)
Cec05g2910 867 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 710 804 IPR035892 -
Cec05g2910 867 PRINTS HIV Rev interacting protein signature 563 584 IPR001164 GO:0005096(InterPro)
Cec05g2910 867 PRINTS HIV Rev interacting protein signature 542 559 IPR001164 GO:0005096(InterPro)
Cec05g2910 867 PRINTS HIV Rev interacting protein signature 523 542 IPR001164 GO:0005096(InterPro)
Cec05g2910 867 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 337 IPR013083 -
Cec05g2910 867 FunFam stromal membrane-associated protein 1 isoform X1 501 631 - -
Cec05g2910 867 FunFam E3 ubiquitin-protein ligase SINAT3 281 337 - -
Cec05g2910 867 Pfam Sina, zinc finger 278 353 - -
Cec05g2910 867 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 338 470 IPR008974 GO:0005515(InterPro)
Cec05g2910 867 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 507 867 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cec05g2910 867 Pfam Putative GTPase activating protein for Arf 512 626 IPR001164 GO:0005096(InterPro)
Cec05g2910 867 CDD Sina 343 470 - -
Cec05g2910 867 Gene3D Arf GTPase activating protein 500 632 IPR038508 -
Cec05g2910 867 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 229 264 IPR049548 -
Cec05g2910 867 CDD C2_ArfGAP 710 854 - -
Cec05g2910 867 ProSiteProfiles ARF GTPase-activating proteins domain profile. 511 625 IPR001164 GO:0005096(InterPro)
Cec05g2910 867 Pfam C2 domain 712 800 IPR000008 -
Cec05g2910 867 CDD RING-HC_SIAHs 227 265 - -
Cec05g2910 867 SMART arf_gap_3 511 632 IPR001164 GO:0005096(InterPro)
Cec05g2910 867 ProSiteProfiles C2 domain profile. 693 809 IPR000008 -
Cec05g2910 867 CDD ArfGap 514 620 - -
Cec05g2910 867 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 709 867 - -
Cec05g2910 867 FunFam E3 ubiquitin-protein ligase SINAT5-like 187 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0781 Cec-Chr1:8605719 Cec05g2910 Cec-Chr5:39200129 2.80E-167 dispersed
Cec01g0783 Cec-Chr1:8621012 Cec05g2910 Cec-Chr5:39200129 1.40E-138 dispersed
Cec04g2223 Cec-Chr4:40002986 Cec05g2910 Cec-Chr5:39200129 2.40E-87 dispersed
Cec05g2910 Cec-Chr5:39200129 Cec06g0130 Cec-Chr6:1279843 3.90E-126 dispersed
Cec05g2910 Cec-Chr5:39200129 Cec03g0789 Cec-Chr3:8998241 2.30E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2910 K04506 - csv:101221541 711.064