Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2913 ATGGCCCTTCTCTCTGCTGAGCCTCGATTTCATGTCTTGGCTGTTGATGACAGCCTTGTTGATAGGAAGCTCATTGAAAGGCTCCTCAAAACTTCCTCCTTCAATGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGCTTGGTTAGAGAAAGAAATGGAAGCACGCATTCTCCTATTTCCCCTGAAAATCATCATCATCATCATCATCATCATCATCATCAAGAGATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTCAGAAAGATCAAGGAATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTTTGCTAAAACCAGTGAAATTATCTGATGTCAATAAGCTTAAGCCTTTCATATCTAGAGGTAAAGCCAAGGAAATGGATTTCAACAACCTCAAGAGAAAGGAAATGGAAAAGAGCCAATCATCTGAGAGAACAAGAACAAAATACAATGAATTTTTCTGA 570 39.3 MALLSAEPRFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTHSPISPENHHHHHHHHHHQEIEVNLIITDYCMPEMTGYDLLRKIKESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFISRGKAKEMDFNNLKRKEMEKSQSSERTRTKYNEFF 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39237960 39239464 - CePI673135_05g029130.1 Cec05g2913 204716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2913 189 Gene3D - 11 186 - -
Cec05g2913 189 ProSiteProfiles Response regulatory domain profile. 11 155 IPR001789 GO:0000160(InterPro)
Cec05g2913 189 MobiDBLite consensus disorder prediction 57 77 - -
Cec05g2913 189 SUPERFAMILY CheY-like 9 147 IPR011006 -
Cec05g2913 189 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 179 IPR045279 GO:0009736(InterPro)
Cec05g2913 189 Pfam Response regulator receiver domain 76 147 IPR001789 GO:0000160(InterPro)
Cec05g2913 189 SMART REC_2 10 151 IPR001789 GO:0000160(InterPro)
Cec05g2913 189 CDD REC_typeA_ARR 12 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2913 K14492 - - csv:101207245 284.648
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0759 Cec-Chr1:8308253 Cec05g2913 Cec-Chr5:39237960 5.80E-52 dispersed
Cec05g2725 Cec-Chr5:37768331 Cec05g2913 Cec-Chr5:39237960 5.40E-38 dispersed
Cec05g2913 Cec-Chr5:39237960 Cec10g1628 Cec-Chr10:30724162 3.20E-49 dispersed
Cec05g2913 Cec-Chr5:39237960 Cec06g1863 Cec-Chr6:31985770 1.90E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g1802 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cec05g1819 . 1 442 Response Regulator Gene Family AT4G31920 50.2 5.7e-94 342.0
Cec11g0360 . 16 343 Response Regulator Gene Family AT4G31920 54.8 1.1e-81 301.2
Cec06g0481 . 29 284 Response Regulator Gene Family AT4G31920 55.5 1.0e-71 268.1
Cec05g0752 . 16 271 Response Regulator Gene Family AT4G31920 54.1 9.7e-70 261.5
Cec08g1802 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.4e-62 236.1
Cec05g0752 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.3e-40 164.5
Cec05g1819 . 93 255 Response Regulator Gene Family AT1G67710 53.8 2.2e-40 163.7
Cec06g1400 . 16 390 Response Regulator Gene Family AT2G25180 55.6 4.7e-102 369.0
Cec11g0360 . 18 362 Response Regulator Gene Family AT2G25180 54.6 1.0e-85 314.7
Cec05g0752 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cec06g0481 . 31 288 Response Regulator Gene Family AT2G25180 57.4 7.5e-76 282.0
Cec08g1802 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.4e-68 256.5
Cec06g0481 . 92 325 Response Regulator Gene Family AT2G01760 51.4 4.3e-54 208.8
Cec06g1400 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.1e-49 191.4
Cec08g1802 . 72 259 Response Regulator Gene Family AT2G01760 51.0 4.6e-48 188.7
Cec11g0360 . 82 280 Response Regulator Gene Family AT2G01760 50.7 4.3e-38 155.6
Cec08g1802 . 9 258 Response Regulator Gene Family AT5G58080 50.6 8.6e-62 235.3
Cec05g0752 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Cec06g0481 . 30 255 Response Regulator Gene Family AT4G16110 66.2 1.1e-78 291.6
Cec05g1819 . 12 233 Response Regulator Gene Family AT4G16110 55.6 3.4e-61 233.4
Cec08g1802 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.3e-59 225.3
Cec06g1400 . 17 249 Response Regulator Gene Family AT4G16110 53.8 8.7e-57 218.8
Cec11g0360 . 21 269 Response Regulator Gene Family AT4G16110 50.2 1.2e-53 208.4
Cec06g1863 . 16 177 Response Regulator Gene Family AT3G48100 69.3 1.6e-53 206.1
Cec05g2725 . 29 162 Response Regulator Gene Family AT3G48100 71.6 2.2e-50 195.7
Cec01g0759 . 11 151 Response Regulator Gene Family AT3G48100 60.3 1.2e-40 163.3
Cec04g0555 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.1e-40 162.5
Cec05g2913 . 4 170 Response Regulator Gene Family AT3G48100 53.9 7.8e-40 160.6
Cec10g1628 . 3 156 Response Regulator Gene Family AT3G48100 52.6 5.6e-38 154.5
Cec07g0579 . 24 155 Response Regulator Gene Family AT3G48100 56.8 8.1e-37 150.6
Cec05g2725 . 1 201 Response Regulator Gene Family AT1G59940 60.0 4.0e-55 212.2
Cec06g1863 . 32 177 Response Regulator Gene Family AT1G59940 66.4 5.2e-47 185.3
Cec01g0759 . 5 152 Response Regulator Gene Family AT1G59940 58.8 2.8e-40 162.9
Cec05g2913 . 11 156 Response Regulator Gene Family AT1G59940 58.9 2.3e-39 159.8
Cec10g1628 . 8 154 Response Regulator Gene Family AT1G59940 57.1 3.0e-39 159.5
Cec04g0555 . 11 154 Response Regulator Gene Family AT1G59940 56.3 8.9e-39 157.9
Cec07g0579 . 19 154 Response Regulator Gene Family AT1G59940 60.3 4.4e-38 155.6
Cec05g2725 . 28 185 Response Regulator Gene Family AT1G10470 71.5 5.7e-54 208.0
Cec06g1863 . 32 161 Response Regulator Gene Family AT1G10470 72.3 2.6e-46 182.6
Cec01g0759 . 5 157 Response Regulator Gene Family AT1G10470 57.5 1.4e-39 160.2
Cec10g1628 . 10 162 Response Regulator Gene Family AT1G10470 55.6 3.0e-39 159.1
Cec04g0555 . 17 154 Response Regulator Gene Family AT1G10470 59.4 2.6e-38 156.0
Cec05g2913 . 11 178 Response Regulator Gene Family AT1G10470 51.8 3.3e-38 155.6
Cec07g0579 . 24 154 Response Regulator Gene Family AT1G10470 61.1 1.7e-37 153.3
Cec06g1863 . 16 177 Response Regulator Gene Family AT3G48100 69.3 1.6e-53 206.1
Cec05g2725 . 29 162 Response Regulator Gene Family AT3G48100 71.6 2.2e-50 195.7
Cec01g0759 . 11 151 Response Regulator Gene Family AT3G48100 60.3 1.2e-40 163.3
Cec04g0555 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.1e-40 162.5
Cec05g2913 . 4 170 Response Regulator Gene Family AT3G48100 53.9 7.8e-40 160.6
Cec10g1628 . 3 156 Response Regulator Gene Family AT3G48100 52.6 5.6e-38 154.5
Cec07g0579 . 24 155 Response Regulator Gene Family AT3G48100 56.8 8.1e-37 150.6
Cec06g1863 . 28 166 Response Regulator Gene Family AT5G62920 74.8 9.9e-51 196.8
Cec05g2725 . 25 175 Response Regulator Gene Family AT5G62920 66.9 7.1e-49 190.7
Cec01g0759 . 11 151 Response Regulator Gene Family AT5G62920 60.3 3.5e-40 161.8
Cec04g0555 . 12 156 Response Regulator Gene Family AT5G62920 57.2 1.0e-39 160.2
Cec10g1628 . 10 156 Response Regulator Gene Family AT5G62920 55.1 1.9e-38 156.0
Cec05g2913 . 11 173 Response Regulator Gene Family AT5G62920 52.4 7.4e-38 154.1
Cec06g1863 . 29 182 Response Regulator Gene Family AT1G19050 70.7 1.7e-51 199.5
Cec05g2725 . 23 185 Response Regulator Gene Family AT1G19050 58.5 5.3e-45 177.9
Cec05g2913 . 8 161 Response Regulator Gene Family AT1G19050 53.9 9.7e-39 157.1
Cec04g0555 . 11 156 Response Regulator Gene Family AT1G19050 54.8 2.8e-38 155.6
Cec01g0759 . 7 154 Response Regulator Gene Family AT1G19050 54.1 1.1e-37 153.7
Cec07g0579 . 24 155 Response Regulator Gene Family AT1G19050 60.6 1.8e-37 152.9
Cec10g1628 . 8 156 Response Regulator Gene Family AT1G19050 53.0 2.4e-37 152.5
Cec04g0555 . 8 264 Response Regulator Gene Family AT2G41310 53.1 2.9e-60 228.8
Cec10g1628 . 1 157 Response Regulator Gene Family AT2G41310 70.1 2.6e-53 205.7
Cec01g0759 . 1 153 Response Regulator Gene Family AT2G41310 64.9 3.9e-49 191.8
Cec05g2913 . 3 160 Response Regulator Gene Family AT2G41310 63.3 1.1e-48 190.3
Cec08g0604 . 7 158 Response Regulator Gene Family AT2G41310 57.8 2.7e-42 169.1
Cec05g2725 . 25 158 Response Regulator Gene Family AT2G41310 59.2 1.0e-41 167.2
Cec06g1863 . 31 162 Response Regulator Gene Family AT2G41310 61.9 3.0e-41 165.6
Cec07g0579 . 18 155 Response Regulator Gene Family AT2G41310 55.6 5.6e-40 161.4
Cec04g0555 . 8 264 Response Regulator Gene Family AT3G57040 53.1 1.7e-63 239.6
Cec10g1628 . 1 157 Response Regulator Gene Family AT3G57040 73.2 2.2e-55 212.6
Cec01g0759 . 8 153 Response Regulator Gene Family AT3G57040 67.8 1.6e-50 196.4
Cec05g2913 . 4 160 Response Regulator Gene Family AT3G57040 64.8 1.4e-49 193.4
Cec05g2725 . 25 158 Response Regulator Gene Family AT3G57040 59.4 1.9e-43 172.9
Cec08g0604 . 11 174 Response Regulator Gene Family AT3G57040 55.2 1.3e-42 170.2
Cec06g1863 . 28 171 Response Regulator Gene Family AT3G57040 58.2 1.8e-41 166.4
Cec07g0579 . 21 155 Response Regulator Gene Family AT3G57040 56.7 3.8e-39 158.7
Cec06g1863 . 26 188 Response Regulator Gene Family AT1G74890 70.3 1.8e-53 206.1
Cec05g2725 . 25 187 Response Regulator Gene Family AT1G74890 61.2 4.3e-47 184.9
Cec05g2913 . 5 161 Response Regulator Gene Family AT1G74890 56.1 6.7e-40 161.0
Cec04g0555 . 12 172 Response Regulator Gene Family AT1G74890 52.1 4.3e-39 158.3
Cec01g0759 . 11 146 Response Regulator Gene Family AT1G74890 60.3 5.7e-39 157.9
Cec10g1628 . 8 154 Response Regulator Gene Family AT1G74890 54.4 6.3e-38 154.5
Cec07g0579 . 24 151 Response Regulator Gene Family AT1G74890 60.2 5.3e-37 151.4
Cec07g0579 . 24 156 Response Regulator Gene Family AT2G40670 70.1 2.0e-47 185.7
Cec05g2725 . 26 159 Response Regulator Gene Family AT2G40670 56.9 3.1e-40 161.8
Cec10g1628 . 6 156 Response Regulator Gene Family AT2G40670 54.6 2.0e-39 159.1
Cec06g1863 . 32 163 Response Regulator Gene Family AT2G40670 60.0 2.9e-38 155.2
Cec04g0555 . 13 156 Response Regulator Gene Family AT2G40670 51.7 7.3e-37 150.6
Cec07g0579 . 6 156 Response Regulator Gene Family AT3G56380 66.4 6.5e-48 187.2
Cec05g2725 . 23 159 Response Regulator Gene Family AT3G56380 52.9 2.9e-40 161.8
Cec06g1863 . 18 163 Response Regulator Gene Family AT3G56380 57.8 5.0e-40 161.0
Cec10g1628 . 6 156 Response Regulator Gene Family AT3G56380 52.6 2.8e-38 155.2
Cec01g0759 . 11 154 Response Regulator Gene Family AT3G56380 54.5 1.8e-37 152.5
Cec05g2913 . 3 151 Response Regulator Gene Family AT3G56380 54.7 8.9e-37 150.2
Cec08g1802 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cec05g0752 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Cec06g0481 . 30 255 Response Regulator Gene Family AT4G16110 66.2 1.1e-78 291.6
Cec05g1819 . 12 233 Response Regulator Gene Family AT4G16110 55.6 3.4e-61 233.4
Cec08g1802 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.3e-59 225.3
Cec06g1400 . 17 249 Response Regulator Gene Family AT4G16110 53.8 8.7e-57 218.8
Cec11g0360 . 21 269 Response Regulator Gene Family AT4G16110 50.2 1.2e-53 208.4
Cec05g1819 . 1 442 Response Regulator Gene Family AT4G31920 50.2 5.7e-94 342.0
Cec11g0360 . 16 343 Response Regulator Gene Family AT4G31920 54.8 1.1e-81 301.2
Cec06g0481 . 29 284 Response Regulator Gene Family AT4G31920 55.5 1.0e-71 268.1
Cec05g0752 . 16 271 Response Regulator Gene Family AT4G31920 54.1 9.7e-70 261.5
Cec08g1802 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.4e-62 236.1
Cec05g0752 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.3e-40 164.5
Cec05g1819 . 93 255 Response Regulator Gene Family AT1G67710 53.8 2.2e-40 163.7
Cec06g1400 . 16 390 Response Regulator Gene Family AT2G25180 55.6 4.7e-102 369.0
Cec11g0360 . 18 362 Response Regulator Gene Family AT2G25180 54.6 1.0e-85 314.7
Cec05g0752 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cec06g0481 . 31 288 Response Regulator Gene Family AT2G25180 57.4 7.5e-76 282.0
Cec08g1802 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.4e-68 256.5
Cec06g0481 . 92 325 Response Regulator Gene Family AT2G01760 51.4 4.3e-54 208.8
Cec06g1400 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.1e-49 191.4
Cec08g1802 . 72 259 Response Regulator Gene Family AT2G01760 51.0 4.6e-48 188.7
Cec11g0360 . 82 280 Response Regulator Gene Family AT2G01760 50.7 4.3e-38 155.6
Cec08g1802 . 9 258 Response Regulator Gene Family AT5G58080 50.6 8.6e-62 235.3
Cec04g1013 . 38 205 Response Regulator Gene Family AT5G60100 68.6 3.3e-54 209.5
Cec01g0007 . 107 244 Response Regulator Gene Family AT5G60100 61.6 2.1e-45 180.3
Cec04g1013 . 67 205 Response Regulator Gene Family AT5G24470 55.4 3.4e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000219 2 6 2 4 4 5 9 5 5 3 5 5 8 5 5 8 5 6 7 5 5 5 6 6 6 5 4 13 7 2 163
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29697 PF00072 Response_reg 6.20E-16 CL0304 Cec TR