Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g2932 ATGATGGCTTGTGCTTCACAGGCGCTGATTGCTGCAAATTCATGCTCGTTTCCGAGCCATAGAATCATTAGAAAGTCACAGAGACTCTTCAATCAAAGTGCTTCCAATCTAGTTTTCACGGTCAGAGCTTCATCTGAAGATTCCGAATGCAATGTCGACGAATGTGCTCCAGATAAAGAGGTGGGGAAAATAAGTATGGAATGGCTAGCTGGGGAGAAAACTAAAGTGGTTGGGACATACCCACCGACGAAAAAAGGGTGGACTGGCTACGTAGAGAAGGACACTGCAGGACAAACAAATATATATTCCGTCGAACCAGTAGTTTATGTAGCAGAAAGTGCTATAAGCTCGGGGACTGCAGGTTCTTCTTCTGAAGGAGCTGAGAACACACTGGCAATTGCAGGTGGAATGGCACTCATTGCAGTTGCTGCAGCTTCATCTATACTGCTTCAAGTTGGTAAGAAACCACCTGAAGTGAAAACCGTTGAATACACTGGACCCTCACTCAGTTACTATATTAACAAGTTCAATACACGAGAAATTGTCCAACAACCGGTACAAAGTGAACCCGAATCGTCCTCTCAAGTCGACAGCGTCGCTCCTGAAGTAACGGAGATTCAAATTCAATCAGACATTGCTGCTCCTGAAGTAACGGATATTCAAGTTGAGTCCCAAACGACAGAGCCATCCTCTTCGGCTGTAGCCAGTGTCTCTTGGGGTAGTAGTGGAAAGATGAGGGTTGAATCAGTTAAATTTTCCACGGAGAAAGCCGGCCACTGGAAGGGTTTCTTTACTGGATCTGCAAGTGCGTTTTTTGCTCCCTCTGCCGTCGAGTGCTGTGGTGATTTTTGTACTATGAATTCCTTGGTTACTCCTAGCACTGTACTCATGGAAAGCGTGGAGGAAACGAAGCCATCAGCTACAAATAGTTGCCATACTGATGGCGGAACAAACACTGCAGAAGTTCAATTTTCAGGATTGTGTCAGAATGGACTACATCTGGATGAGAATTGTTGTAATCAAGCATTAAAGTTATTTAGAGAGACGAAGCACCTTTTGGTTGCAAATATATCAGCAATCGGGAGTGGAATTCCTGAAGAAGCCGAACGTTTTTGGTCTGCCTTTGTTTTATATACTATGAAGAGGCTGAGAGATAAGAATTCAGAGAGTTCGCATCAGGGATCTGAGAACAACAGCTTCACTTTATGCCACATACTGAGAGTTTGCAAGCTGAACATCGTGGAATTTTTTAAAGAGCTGCCGCAGTTTGTTGTTAAAACTGGTCCAGTATTAAGTAATCTCTATGGTGCAGACTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAGGCTAACTTCGTGCATTTGAGCCTCTTAAGCAAGTATTATAAGCGTGTCTACCGAGAGTTCTTCTCCACCAATGATGCTAATGTTGAAAAGCAGCCAGCTATATCCTGCCCCACCGCTTACTTATCTGATTACCATCGCTTTGGATGGTTATTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCAATTTTGGCTATTTTAATTCTTCATATTCCAGTTCGTTTCAGAAACTTCAGCATTCTTGACTCTGAACGCTTTGTTAAGAAAGGTGGAAAAGGAGTGGATCTGCTTGGATCACTTTGTAATGTCTATGACACCTCAGAGGAAGAACTGAAGGAAGTTATGGAGAAGGCAAATAGTTTGATAGAAGATATTTTGAAGAAGAAGCCTCGTTTGGCTTCTGAGTGTAACAGTAAAAGCTTGGAGAATATTGACACTGAGGGTTTGATATACTTTGAAGGCTTAATGGAGGAGTCATCTCTTTCATCCAGTTTAGAAATTCTTGAAAAGGACTATGAAGATGCAATTTGTAATAATAAAGGTGAGCTTGATGAGCGGATTTTTGTTAGTGACGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCAGCAGGTGCTGTTACAATGGGTGGCATCAAGAGGAAGTTTGACTCTGTGTGCTCACCTGCAAGGACAATAACCAGTCCAATGTCTCCACTTCGCTCTCCTGCTTCGCATGCCAATGGCACTCTTAATAGTGGTAATGCAAAACTTGCTGCCACACCTGTTAGCACAGCCATGACAACAGCAAAGTGGCTCAGAACTGTTATTTCCCCACTTCCAGCAAAACCTTCAGCAGAGATGGAGCGCTTTTTGGCTTCATGTGATAGGGATGTAACTAATGATGTAGTCCGTAGGGCACATATTATACTTGAGGCCATATTTCCAAATAGTGCTCTAGGAGAGCGCTGTATAGCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATCTGGGCAGAACAGCGACGACTAGAAGCACTGAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTTACTAATGAGAGGTTCCACAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCAACTCATAAAACTGTTACAATGTTGTTTCCTGCAGTAATGGAAAGAACTGGCATAACAGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCTTTGGAAGAACGACTTTTAGAGAGTATGGTATGGGAAAAAGGTTCATCAATGTATAACTCCCTGATTGTTGCTAAACCTGCCCTTGCTGCAGAAATTAATCGTCTGGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCCATTGCAATTCAAATTAACTTTTCTGGTATGGGGGTATCAACCATGCCTAATCTGCAAAAGCATGAGAGTTTGCCAGGTCAGAATGGGGATATAAGATCGCCCAAAAGATTGTGCACAGATTTAAGAAGTGTGTTAGTGGAACGGAATTCCTTTACTTCTCCGGTGAAGGACCGACTCATGGCTTTCAGTAGTATTAAGTCTAAGCTTCTGCCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCTGGAGGTGGTGGAGAAACGTGTGCTGAAACTGGAATTAACATTTTCTTTACCAAGATCATCAAGTTGGCTGCTGTAAGAGTCAACGGCATGGTGGAAAGGTTGCAGTTATCTCATCTGATCAGGGAGAATGTCTACTGCCTTTTCCAGCAGATACTCAGTCAAAAGACATCACTATTATTTAACCGTCACATCGACCAGATCATCCTTTGTTGTTTCTATGGCGTTGCAAAGATATCTCAATTGAGCCTTACGTTTAGGGAAATCATATACAACTACAGGAAGCAACCGCAATGTAAACCACAAGTCTTCCGCAATGTGTTTGTTGACTGGTCTTCAGCACGTCGTAATGGGAGATCAGGACAGGATCATGTGGATATAATTACCTTCTACAATGAAATATTTATTCCTTCTGTGAAACCTTTGCTTGTTGAGATTGGCCCGGCTGGATCAACCATGAAAACTGACAGGGTTCCTCAAGTCAACAACAACAGCGATGCACCATGTCCTGGATCACCTAAGATATCTCCTTTTCCAAGCCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCTCCATTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCGAAAAGCTACTACGCTTGCGTTGGAGAGAGCACCCATGCGTTTCAAAGCCCTTCAAAAGACCTTACTGCCATAAACAACCGTTTGAATGGTACGCGGAAACTCCGAGGCACACTAAATTTTGACGACGCGGACGTTGGTTTAGTCAGTGATTCCCTGGTGGCTAACAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCTTCAGGTGCACCTATTAAATCTGAACAACCTGATTCTTAA 3960 42.8 MMACASQALIAANSCSFPSHRIIRKSQRLFNQSASNLVFTVRASSEDSECNVDECAPDKEVGKISMEWLAGEKTKVVGTYPPTKKGWTGYVEKDTAGQTNIYSVEPVVYVAESAISSGTAGSSSEGAENTLAIAGGMALIAVAAASSILLQVGKKPPEVKTVEYTGPSLSYYINKFNTREIVQQPVQSEPESSSQVDSVAPEVTEIQIQSDIAAPEVTDIQVESQTTEPSSSAVASVSWGSSGKMRVESVKFSTEKAGHWKGFFTGSASAFFAPSAVECCGDFCTMNSLVTPSTVLMESVEETKPSATNSCHTDGGTNTAEVQFSGLCQNGLHLDENCCNQALKLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYTMKRLRDKNSESSHQGSENNSFTLCHILRVCKLNIVEFFKELPQFVVKTGPVLSNLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTNDANVEKQPAISCPTAYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHIPVRFRNFSILDSERFVKKGGKGVDLLGSLCNVYDTSEEELKEVMEKANSLIEDILKKKPRLASECNSKSLENIDTEGLIYFEGLMEESSLSSSLEILEKDYEDAICNNKGELDERIFVSDEDSLLGSGSLSAGAVTMGGIKRKFDSVCSPARTITSPMSPLRSPASHANGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVMERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALAAEINRLGLLAEPMPSLDAIAIQINFSGMGVSTMPNLQKHESLPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLMAFSSIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFTKIIKLAAVRVNGMVERLQLSHLIRENVYCLFQQILSQKTSLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGSTMKTDRVPQVNNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS 1319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39519107 39531152 - CePI673135_05g029320.1 Cec05g2932 204735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g2932 1319 SUPERFAMILY Cyclin-like 1038 1207 IPR036915 -
Cec05g2932 1319 Coils Coil 566 590 - -
Cec05g2932 1319 FunFam Retinoblastoma-related protein 1 990 1200 - -
Cec05g2932 1319 Pfam Domain of unknown function (DUF3452) 394 532 IPR024599 -
Cec05g2932 1319 Gene3D - 1001 1193 - -
Cec05g2932 1319 MobiDBLite consensus disorder prediction 1182 1197 - -
Cec05g2932 1319 Pfam Retinoblastoma-associated protein B domain 1040 1167 IPR002719 GO:0005634(InterPro)|GO:0051726(InterPro)
Cec05g2932 1319 SUPERFAMILY Cyclin-like 723 918 IPR036915 -
Cec05g2932 1319 FunFam Retinoblastoma-related protein 1 718 906 - -
Cec05g2932 1319 MobiDBLite consensus disorder prediction 1181 1213 - -
Cec05g2932 1319 Pfam Retinoblastoma-associated protein A domain 715 916 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Cec05g2932 1319 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 302 1316 IPR028309 GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER)
Cec05g2932 1319 SMART RB_A_2 715 916 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Cec05g2932 1319 CDD CYCLIN_AtRBR_like 1040 1171 - -
Cec05g2932 1319 MobiDBLite consensus disorder prediction 688 707 - -
Cec05g2932 1319 SMART DUF3452_2 383 532 IPR024599 -
Cec05g2932 1319 Gene3D - 718 906 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29702 PF01858 RB_A 1.90E-63 CL0065 Cec TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g2932 K04681 - csv:101219810 1902.87