Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0005 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGCGGAGGAGGCGGTGGTGCTCGAATCTTAGCCGATTTACCTTACACAAATAACTCCACCACCAACGCCAACAATAACCCCACCGGCGGCATCGGCGGCGGCGGAAATATGTCCTCCGGCGCAATCGCTCCGCCGCGCCTCATCACTCAATCTCTCACCAAATCGATGTTCAACTCCCCCGGACTCTCTCTCGCTCTTACGAACATGGACGGCGGGCAGGGGGATTTAGCTGCCCGACTGCCCGAGGGTTTCGAGCATAATGTTGGAAGAAGAGGCAGAGAAGAAGAACACGAGAGTAGATCTGGGAGTGACAACATGGACGGCGGCTCCGGTGATGACCAGGACGCCGCCGACAACCCTCCGAGGAAGAAACGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTCTTTAAAGAGTGCCCTCATCCTGATGAGAAGCAACGGCTCGAGTTGAGTCGGAGGCTGTGTTTAGAAACTAGGCAAGTTAAATTTTGGTTCCAAAATCGGAGGACCCAAATGAAGACCCAATTGGAACGCCATGAAAATACTTTACTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTCGAGATGCTATGAGGAACCCAATCTGTTCGAACTGTGGTGGTCCAGCAATCATCGGCGAAATCTCGCTGGAAGAACAGCAGTTGAGAATTGAAAATGCTCGGTTGAAGGATGAATTGGACCGGGTTTGTGCGCTTGCTGGGAAGTTTCTTGGCAGGCCGATTTCGTCGCTGGCTAACTCAATTGCACCTCCATTGCCGAGCTCGAGTCTGGAACTGGGAGTTGGGAGTAATGGGTTTGGGAGTTTGACCATGGCGACGTCAATGCCTATTGGGCCTGATTTTGGAGGTGGGTTGTCAGGCAATCTGGCTGTCGTTCAGCCACCTGCGAGGCCAACACCGGGGATGGGACTTGATCGTTCAGTTGAGCGATCTATGCTACTGGAGCTTGCTTTGGCTGCCATGGATGAATTGGTCAAAATGGCGCAGACGGACGAGCCACTTTGGATTGGGAGCTTGGAAGGTGGGAGAGAAATACTGAACCAGGAGGAGTACATGAGGACATTCACTCCTTGCATAGGTATGAAACCAAACGGTTTTGTCACCGAGGCGTCGAGAGAAACTGGCATGGTGATCATCAATAGCTTGGCTCTCGTGGAGACATTGATGGACTCGAATCGATGGGCAGAGATGTTTCCGTGTATGATTGCTCGAACCACGACCACTGATGTGATCTCCAGTGGCATGGGGGGAACGAGGAATGGTGCACTTCAACTGATGCACGCAGAGCTTCAAGTGCTCTCGCCGTTGGTGCCAGTCCGGGAAGTCAATTTTCTGCGGTTTTGCAAGCAGCACGCCGAAGGGGTATGGGCAGTCGTCGATGTATCGGTCGATACCATGAGAGAGACTCCGACCAGTGGTGGTCCTTCATTTGGCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAACGGGTATTCCAAGGTTACGTGGGTGGAACATGCGGAGTTCGATGATAGCCAAGTGCACCAGCTCTACCGTCCCCTACTCAGCTCTGGTATGGGCTTTGGAGCACAACGGTGGGTTGCCACCCTTCAACGACAATGTGAATGCCTCGCCATCCTCATGTCATCCGCTGTACCAATCCGAGACCACACTGCCATAACCGCAGGTGGGCGGCGGAGCATGCTGAAGCTAGCCCAGAGAATGACAGCGAACTTCTGCGCAGGTGTGTGTGCATCCACAGTGCACAAATGGAACAAGCTGAATGCTGGGAGTGTAGATGAGGACGTCCGTGTCATGACGCGGAAGAGTGTGGACGATCCTGGGGAGCCTCCGGGTATTGTGTTGAGCGCCGCTACGTCAGTGTGGCTCCCGGTATCTCCCCAACGGCTCTTTGATTTCCTTCGTGACGAGCGGCTGAGGAGTGAATGGGACATCCTATCCAACGGCGGCCCCATGCAGGAGATGGCCCATATTGCCAAAGGCCAAGATCATGGCAACTGCGTCTCTCTTTTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTCTACAAGAGACATGCATAGACGCGGCGGGATCGCTTGTGGTGTACGCGCCGGTGGACATTCCGGCAATGCACGTCGTGATGAACGGTGGCGATTCGGCTTACGTGGCACTTTTACCGTCAGGGTTTGCGATCGTGCCTGACGGGGCGGTGACAGTGACCAATGGGAGCAGTCCAAGTGGCGGGGAGGGTCCACAGAGTCAGAGAGCGACAGGCGGTGGGTCCCTCCTCACCGTCGCATTTCAGATCCTCGTGAATAGCCTCCCTACGGCCAAGCTCACCGTAGAATCGGTTGAAACGGTCAATAATCTCATATCTTGCACCGTCCAGAAAATCAAGGCCGCTCTTCAATGCGAAACCTGA 2511 54.04 MSFGGFLDGGGGGGGGGARILADLPYTNNSTTNANNNPTGGIGGGGNMSSGAIAPPRLITQSLTKSMFNSPGLSLALTNMDGGQGDLAARLPEGFEHNVGRRGREEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLAVVQPPARPTPGMGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYMRTFTPCIGMKPNGFVTEASRETGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDTMRETPTSGGPSFGNCRRLPSGCVVQDMPNGYSKVTWVEHAEFDDSQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAVPIRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVTVTNGSSPSGGEGPQSQRATGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 119486 124375 - CePI673135_06g000050.1 Cec06g0005 204742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0005 836 CDD START_ArGLABRA2_like 337 567 - -
Cec06g0005 836 Gene3D - 121 207 - -
Cec06g0005 836 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec06g0005 836 MobiDBLite consensus disorder prediction 95 114 - -
Cec06g0005 836 Coils Coil 185 217 - -
Cec06g0005 836 FunFam Homeobox-leucine zipper protein GLABRA 2 342 567 - -
Cec06g0005 836 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677(InterPro)
Cec06g0005 836 Pfam Homeodomain 134 189 IPR001356 GO:0003677(InterPro)
Cec06g0005 836 CDD homeodomain 133 191 IPR001356 GO:0003677(InterPro)
Cec06g0005 836 SMART HOX_1 132 195 IPR001356 GO:0003677(InterPro)
Cec06g0005 836 SMART START_1 342 568 IPR002913 GO:0008289(InterPro)
Cec06g0005 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 112 835 IPR042160 -
Cec06g0005 836 Pfam START domain 342 568 IPR002913 GO:0008289(InterPro)
Cec06g0005 836 SUPERFAMILY Bet v1-like 335 568 - -
Cec06g0005 836 SUPERFAMILY Bet v1-like 596 829 - -
Cec06g0005 836 Coils Coil 232 252 - -
Cec06g0005 836 MobiDBLite consensus disorder prediction 94 141 - -
Cec06g0005 836 SUPERFAMILY Homeodomain-like 116 191 IPR009057 -
Cec06g0005 836 FunFam Homeobox-leucine zipper protein HDG1 121 207 - -
Cec06g0005 836 ProSiteProfiles START domain profile. 333 571 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0192 Cec-Chr2:1809795 Cec06g0005 Cec-Chr6:119486 1.60E-208 dispersed
Cec03g0473 Cec-Chr3:5045051 Cec06g0005 Cec-Chr6:119486 6.90E-188 dispersed
Cec04g1921 Cec-Chr4:37595892 Cec06g0005 Cec-Chr6:119486 1.30E-191 dispersed
Cec05g1633 Cec-Chr5:26105530 Cec06g0005 Cec-Chr6:119486 5.40E-79 dispersed
Cec06g0005 Cec-Chr6:119486 Cec07g1431 Cec-Chr7:29884000 8.40E-150 dispersed
Cec01g1810 Cec-Chr1:32538611 Cec06g0005 Cec-Chr6:119486 1.10E-187 transposed
Cec05g1245 Cec-Chr5:11765641 Cec06g0005 Cec-Chr6:119486 2.90E-19 transposed
Cec09g1162 Cec-Chr9:11617178 Cec06g0005 Cec-Chr6:119486 2.10E-172 transposed
Cec05g0211 Cec-Chr5:1719180 Cec06g0005 Cec-Chr6:119486 1.30E-266 wgd
Cec05g0954 Cec-Chr5:8315235 Cec06g0005 Cec-Chr6:119486 5.50E-263 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29703 PF01852 START 1.20E-57 CL0209 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0005 K09338 - csv:101222248 1538.86