Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0019 ATGGCCGATATTCAGAAACAAGAACTCGACGACGACGACGACTCTCCGCCCACCCATCTCCCTATCAATGACTCTGACTCCTCTCGAATCGACCTTCTTTCCCTTCCTCCTAAGCAGGAGCATCCCGATTCCGACGACTCCAACCTCCCCCCCTCCGGAATTCAGCTCCTCAAGTTCACTGCAGACATTGCTAAATCTGTCTCATCTCTCCCGCCCAAGAGAGCGTCTACCAAGGATCGCCACACCAAGGTCGAGGGCAGAGGCCGGAGAATCCGAATTCCGGCCACCTGTGCCGCGCGTATCTTCCAGTTGACTCGAGAGCTCGGCCACAAGTCCGACGGCGAAACTATTCGGTGGCTTCTGGAGCGGGCCGAGCCGGCTATCATCGCCGCTACTGGGACTGGTACCATTCCCGCTATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACCACTTCCTCTTCTAACCAAGATTCTGCCGATCCATCCGCGGCTAAGAAGCGGCGTAAGCGCCCCGCTAACAGTGACTACGTTGACGTAAACGACGCCCTCTCCGTCTCCGTCTCCGCCTCGAACGGCGTCGTTCAGGCCGGTACCGTCGCCGGTTCCCCCGCCGTCCAACAGGCTTTTCCACCGGGGTTCGTTCCAGTGTGGGCCATCCCATCCAACGCCATAATTCCCGGGGCGGTTTTCATGGTACCATCCGTGGCATGTTCTTCCACCCGTCCACAGTTGTTCTCATTTCCGGCTCCGGCGGCGCCGCTCATCAACACGTCGGCGCGGGCCATTTCTACCTTCCCGTCGAAGCCAGACACGTCTCACATTCAATCCAACCCCACCAATCAAAGCTCCAGCACTTCAAGCTCCTCCGCTTCCAAGTCTCAATCTGTCATGGCGCCGATCTCGAGCTCTACCGTTACAACGTCCGGCAAAACGACGACGCAGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCGTCAATTCATGTCTCGCTCGTCCTCAAAACATTGA 1029 56.95 MADIQKQELDDDDDSPPTHLPINDSDSSRIDLLSLPPKQEHPDSDDSNLPPSGIQLLKFTADIAKSVSSLPPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAAKKRRKRPANSDYVDVNDALSVSVSASNGVVQAGTVAGSPAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFPAPAAPLINTSARAISTFPSKPDTSHIQSNPTNQSSSTSSSSASKSQSVMAPISSSTVTTSGKTTTQMLRDFSLEIYDKEERQFMSRSSSKH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 230762 231790 + CePI673135_06g000190.1 Cec06g0019 204756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0019 342 MobiDBLite consensus disorder prediction 151 178 - -
Cec06g0019 342 MobiDBLite consensus disorder prediction 1 52 - -
Cec06g0019 342 MobiDBLite consensus disorder prediction 164 178 - -
Cec06g0019 342 Pfam TCP family transcription factor 76 172 IPR017887 -
Cec06g0019 342 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 53 294 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cec06g0019 342 MobiDBLite consensus disorder prediction 266 315 - -
Cec06g0019 342 ProSiteProfiles TCP domain profile. 77 131 IPR017887 -
Cec06g0019 342 MobiDBLite consensus disorder prediction 1 19 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0019 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2670 Cec-Chr5:37290645 Cec06g0019 Cec-Chr6:230762 5.90E-28 dispersed
Cec06g0019 Cec-Chr6:230762 Cec06g1822 Cec-Chr6:31656827 6.70E-29 dispersed
Cec05g0929 Cec-Chr5:8120359 Cec06g0019 Cec-Chr6:230762 6.50E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec01g0828 . 48 262 TCP Transcription Factor Family AT5G23280 63.1 6.0e-67 251.1
Cec02g1490 . 37 257 TCP Transcription Factor Family AT5G23280 59.4 1.2e-59 226.9
Cec06g0019 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 3.8e-67 252.3
Cec05g2670 . 66 160 TCP Transcription Factor Family AT3G47620 89.7 8.4e-41 165.2
Cec01g1783 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cec11g1393 . 149 231 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cec11g1393 . 149 241 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Cec05g1534 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.0e-60 229.2
Cec06g0201 . 26 257 TCP Transcription Factor Family AT3G27010 51.0 6.2e-53 204.9
Cec02g1490 . 9 255 TCP Transcription Factor Family AT5G08330 56.3 1.3e-63 240.0
Cec01g0828 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.5e-63 237.3
Cec11g1393 . 148 389 TCP Transcription Factor Family AT1G35560 50.4 1.6e-43 173.7
Cec07g1766 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29705 PF03634 TCP 5.90E-30 No_clan Cec TF