Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec06g0024 | ATGGGAAGAGGAAGAGTGGAACTGAAGAGAATAGAGAACAAAATCAACCGTCAAGTTACATTCTCAAAACGCCGAAACGGACTCCTGAAAAAGGCTTATGAACTGTCTGTTCTTTGCGATGCGGAAGTGGCTTTGATCATCTTCTCCACCCGCGGCAAGCTCTACGAATTTGGCAGTGCTGGTACCACCAAAACATTGGAGCGATATCAACGTTGTTGCTTCTCTCCTCAACACAATTATGCTGAACAACAAACCCAGAACTGGTTCCAGGAGATCTCAAAACTGAAAGCTAAATATGAATCTCTTTGCCGCACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTAAAGGAGCTCCAAAATCTTGAGAAGCAACTTGAAGCAGCCCTTGCTCAAGCTAGACAAAGGAAGACACAGATTATGATTGAGCAGATCGAAGACCTGCGCAGAAAGGAGCGTCAACTTGGGGACCTCAACAGGGAGCTTAAGCACAAGCTTGAAGCAGAGAGACAAAATCTTACAGCCATCCAAAGTTTTTGGAGCTCTGGGTCTGGCTCTGCTGAACATGCCAACAACTTCCCATTGAATCCTTTACCACCTAACCCTATCGAATGCCAACATGAACCCGTCTTACAAATCGGGTACCAGAATTATTTCTCAGAAGAGGGGCCATCTGTCCAAAAGGGCATGACATGGGAGTGCGATGAATGGGGCTATTGTTTTGAGGTTACTTATAAAGGCTTTTAG | 756 | 45.37 | MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFGSAGTTKTLERYQRCCFSPQHNYAEQQTQNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQIMIEQIEDLRRKERQLGDLNRELKHKLEAERQNLTAIQSFWSSGSGSAEHANNFPLNPLPPNPIECQHEPVLQIGYQNYFSEEGPSVQKGMTWECDEWGYCFEVTYKGF | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 275717 | 281686 | + | CePI673135_06g000240.1 | Cec06g0024 | 204761 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec06g0024 | 251 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0024 | 251 | Pfam | K-box region | 82 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cec06g0024 | 251 | Coils | Coil | 119 | 171 | - | - | |
Cec06g0024 | 251 | FunFam | MADS-box transcription factor 1 | 13 | 85 | - | - | |
Cec06g0024 | 251 | SUPERFAMILY | SRF-like | 2 | 92 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0024 | 251 | CDD | MADS_MEF2_like | 2 | 72 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cec06g0024 | 251 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0024 | 251 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0024 | 251 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0024 | 251 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 188 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cec06g0024 | 251 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0024 | 251 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0024 | 251 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0024 | 251 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0024 | 251 | ProSiteProfiles | K-box domain profile. | 85 | 175 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec03g0368 | Cec-Chr3:4084260 | Cec06g0024 | Cec-Chr6:275717 | 2.30E-37 | dispersed | |
Cec06g0024 | Cec-Chr6:275717 | Cec06g0216 | Cec-Chr6:2287040 | 9.90E-54 | dispersed | |
Cec06g0024 | Cec-Chr6:275717 | Cec06g0025 | Cec-Chr6:282325 | 9.30E-36 | tandem | |
Cec05g2044 | Cec-Chr5:32349924 | Cec06g0024 | Cec-Chr6:275717 | 2.00E-25 | transposed | |
Cec10g1221 | Cec-Chr10:26338971 | Cec06g0024 | Cec-Chr6:275717 | 8.00E-28 | transposed | |
Cec05g0918 | Cec-Chr5:7959993 | Cec06g0024 | Cec-Chr6:275717 | 3.10E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29706 | PF01486 | K-box | 4.70E-30 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec06g0024 | K09264 | - | csv:101219421 | 384.8 |