Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0024 ATGGGAAGAGGAAGAGTGGAACTGAAGAGAATAGAGAACAAAATCAACCGTCAAGTTACATTCTCAAAACGCCGAAACGGACTCCTGAAAAAGGCTTATGAACTGTCTGTTCTTTGCGATGCGGAAGTGGCTTTGATCATCTTCTCCACCCGCGGCAAGCTCTACGAATTTGGCAGTGCTGGTACCACCAAAACATTGGAGCGATATCAACGTTGTTGCTTCTCTCCTCAACACAATTATGCTGAACAACAAACCCAGAACTGGTTCCAGGAGATCTCAAAACTGAAAGCTAAATATGAATCTCTTTGCCGCACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTAAAGGAGCTCCAAAATCTTGAGAAGCAACTTGAAGCAGCCCTTGCTCAAGCTAGACAAAGGAAGACACAGATTATGATTGAGCAGATCGAAGACCTGCGCAGAAAGGAGCGTCAACTTGGGGACCTCAACAGGGAGCTTAAGCACAAGCTTGAAGCAGAGAGACAAAATCTTACAGCCATCCAAAGTTTTTGGAGCTCTGGGTCTGGCTCTGCTGAACATGCCAACAACTTCCCATTGAATCCTTTACCACCTAACCCTATCGAATGCCAACATGAACCCGTCTTACAAATCGGGTACCAGAATTATTTCTCAGAAGAGGGGCCATCTGTCCAAAAGGGCATGACATGGGAGTGCGATGAATGGGGCTATTGTTTTGAGGTTACTTATAAAGGCTTTTAG 756 45.37 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFGSAGTTKTLERYQRCCFSPQHNYAEQQTQNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQIMIEQIEDLRRKERQLGDLNRELKHKLEAERQNLTAIQSFWSSGSGSAEHANNFPLNPLPPNPIECQHEPVLQIGYQNYFSEEGPSVQKGMTWECDEWGYCFEVTYKGF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 275717 281686 + CePI673135_06g000240.1 Cec06g0024 204761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0024 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0024 251 Pfam K-box region 82 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec06g0024 251 Coils Coil 119 171 - -
Cec06g0024 251 FunFam MADS-box transcription factor 1 13 85 - -
Cec06g0024 251 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0024 251 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec06g0024 251 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0024 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0024 251 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0024 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec06g0024 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0024 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0024 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0024 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0024 251 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0368 Cec-Chr3:4084260 Cec06g0024 Cec-Chr6:275717 2.30E-37 dispersed
Cec06g0024 Cec-Chr6:275717 Cec06g0216 Cec-Chr6:2287040 9.90E-54 dispersed
Cec06g0024 Cec-Chr6:275717 Cec06g0025 Cec-Chr6:282325 9.30E-36 tandem
Cec05g2044 Cec-Chr5:32349924 Cec06g0024 Cec-Chr6:275717 2.00E-25 transposed
Cec10g1221 Cec-Chr10:26338971 Cec06g0024 Cec-Chr6:275717 8.00E-28 transposed
Cec05g0918 Cec-Chr5:7959993 Cec06g0024 Cec-Chr6:275717 3.10E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29706 PF01486 K-box 4.70E-30 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0024 K09264 - csv:101219421 384.8