Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0025 ATGGTGAGAGGAAAGACGCAGATGAGGCTAATAGAGAACGCCACAAGCCGACAAGTCACCTTCTCCAAGAGGCGAAATGGTTTGATGAAAAAAGCTTTTGAGCTATCAGTTCTCTGTGATGCTGAAGTTGCTCTTATTATTTTCTCCCCTAGAGGAAAGCTTTACGAATTTGCTAGCTCAAGCATGCAGGCAACTATAGAGCGTTACCGAAAGCATGCAAAAACCAAGGATGCCCAGGATCCTCCATCTGTTAATAATGTTGTACAGTTGGAGCATCTGAATCATGAAGAAGCAGCTAGCCTGATGAAGAAAATAGAGCAACTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCATGGATGAACTTCAACAACTTGAAAATCAGTTGGAGAAAAGTGTTTCCAAAATTAGAGCCAGAAAGATTGAAGTGTTTGAAGAACAGATTAAACAACTAAGGCAAAAGGAGAAAGTCTTGCAAGATGAAAATGCTAAGCTACTTCAAAAGTGGGAAAGTGAGGGAGATGGAAGAGTAAATAATGAAGGAGAAAGAGGAGAGAAATTGTTAAACTATGCAGAAAGTAGCAGCCCAAGTTCTGAGGTGGAGACGGAATTGTTCATTGGGCCACCCGAAGCAAGGCCCAGAAGATTTCTTTCCCTTCACTGA 681 41.7 MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDLGSCSMDELQQLENQLEKSVSKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGDGRVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 282325 293159 - CePI673135_06g000250.1 Cec06g0025 204762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0025 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0025 226 Coils Coil 98 118 - -
Cec06g0025 226 Gene3D - 14 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0025 226 FunFam MADS-box transcription factor 1 13 83 - -
Cec06g0025 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 187 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec06g0025 226 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0025 226 Pfam K-box region 94 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec06g0025 226 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0025 226 Coils Coil 125 174 - -
Cec06g0025 226 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec06g0025 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0025 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0025 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0025 226 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec06g0025 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec06g0025 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0318 Cec-Chr1:3260637 Cec06g0025 Cec-Chr6:282325 1.40E-35 dispersed
Cec01g0537 Cec-Chr1:5559499 Cec06g0025 Cec-Chr6:282325 1.10E-45 dispersed
Cec01g1760 Cec-Chr1:32147733 Cec06g0025 Cec-Chr6:282325 8.60E-11 dispersed
Cec05g0230 Cec-Chr5:1845998 Cec06g0025 Cec-Chr6:282325 5.80E-55 dispersed
Cec05g0925 Cec-Chr5:8073960 Cec06g0025 Cec-Chr6:282325 6.60E-45 dispersed
Cec06g0025 Cec-Chr6:282325 Cec08g0211 Cec-Chr8:3858851 7.10E-35 dispersed
Cec06g0024 Cec-Chr6:275717 Cec06g0025 Cec-Chr6:282325 9.30E-36 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29707 PF01486 K-box 6.50E-26 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0025 - - - 0.0