Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0035 ATGGATGGAATTACACCCCACAATCGCCCTCTTCCTCCTCCTTTCCTTTCCAAAGATCTCCATCTCCACCATGGATTATTCCACCACCACCAAAACTCCGACGACGACCAAACCGCCGGAGCTAAGAGAGATAGAGAGGACGAAAACCCCACCACGGCGGCGATGGCGGACAGCAAAGAATTATCTAATTCTTCATCTCGACGCCCACGTGGCCGACCAGCTGGTTCCAAAAACAAGCCAAAGCCACCCATTATAATTACTAGAGACAGCGCTAACGCCCTCAGATCTCATCTCATCGAAATCTCCACTGCCTCCGACATCGTCGATTCCCTCGCTGCCTTCGCACGCCGCCGCCAGCGTGGCGTTTGTATTCTAAGTGCCACGGGTACCGTCGCCAACGTCACTCTCCGGCAGCCGGCCTCCCCCGGCGCTGTCATCACCTTACATGGGAGATTTGAAATTCTCTCCCTCTCCGGCTCTTTCCTCCCACCGCCGGCTCCCCCGGCCGCCTCTGGTCTGACCGTCTACTTGGCTGGCGGGCAGGGGCAGGTCGTAGGTGGAAATGTAATCGGCCCACTTTCGGCGTCCGGTCCGGTGATTATCATGGCGGCTTCTTTTGGTAATGCTGCGTATGAACGGCTACCCATAGATGACGACGACGAAACGTCACCGGCAGCAGAGATTGCCGGACAACAAGCAGCACCGCCGCCGCCACAATTGATGGGGGATCCTAATGGGGGATTGTTTCATGGGATGGCGCAGAATGTTGTGAATTCTTCATGCCAATTGCCGGCAGAGGCGGCTGCGGCGTTTTGGGGAGGAGGTCGGCCACCGTATTGA 840 56.9 MDGITPHNRPLPPPFLSKDLHLHHGLFHHHQNSDDDQTAGAKRDREDENPTTAAMADSKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVDSLAAFARRRQRGVCILSATGTVANVTLRQPASPGAVITLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPLSASGPVIIMAASFGNAAYERLPIDDDDETSPAAEIAGQQAAPPPPQLMGDPNGGLFHGMAQNVVNSSCQLPAEAAAAFWGGGRPPY 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 362714 363553 - CePI673135_06g000350.1 Cec06g0035 204772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0035 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 240 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cec06g0035 279 MobiDBLite consensus disorder prediction 55 71 - -
Cec06g0035 279 FunFam AT-hook motif nuclear-localized protein 94 221 - -
Cec06g0035 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 206 IPR005175 -
Cec06g0035 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 218 - -
Cec06g0035 279 CDD DUF296 95 206 IPR005175 -
Cec06g0035 279 ProSiteProfiles PPC domain profile profile. 91 231 IPR005175 -
Cec06g0035 279 Gene3D - 94 224 - -
Cec06g0035 279 MobiDBLite consensus disorder prediction 216 244 - -
Cec06g0035 279 MobiDBLite consensus disorder prediction 28 85 - -
Cec06g0035 279 MobiDBLite consensus disorder prediction 28 53 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0348 Cec-Chr1:3575333 Cec06g0035 Cec-Chr6:362714 9.40E-75 dispersed
Cec06g0035 Cec-Chr6:362714 Cec09g1211 Cec-Chr9:12651514 7.90E-60 dispersed
Cec02g0333 Cec-Chr2:3063953 Cec06g0035 Cec-Chr6:362714 2.80E-59 transposed
Cec05g0251 Cec-Chr5:2055573 Cec06g0035 Cec-Chr6:362714 6.40E-67 wgd
Cec05g0895 Cec-Chr5:7744480 Cec06g0035 Cec-Chr6:362714 2.00E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0035 - - - 0.0