Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0038 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGGCCGGGAACTGCCAGCGCCGGCGGTGGCGTCGGTGGCGGCGGAGGAGGGCCATGTGGAGCTTGCAAGTTTTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTTGCCCCTTATTTCGACTCCGAGCAAGGCGCAGCCCATTTCGCAGCTGTGCACAAGGTGTTCGGAGCCAGCAATGTCTCGAAGCTCCTCCTTCATATTCCGGTCCACAAACGTCTCGACGCTGTCGTCACGATTTGTTACGAGGCTCAAGCACGTCTCCGAGACCCTGTCTACGGTTGCGTCGCTCACATCTTTGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGACTTACCTTCAAGCCCATCTAGCAACACTGGAGCTTCCGTCCCCGCCGAACCCGCCGCCGCCACCTCCGCCACCAAGTTTTCCGGCGCAACCGCCGCTTTCCATCTCAGACCTGCCGTCGGCCTCCTCCCTGCCGGCCACTTACGACTTGTCGTCCCTCTTCGATCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCCCCGCCAGTTCGCCGGCGGAGGTGGCGGTTCATCAACGGCGGCAGGAGAAGGCGATCTTCAAGCCCTGGCTCGCGAACTCCTCCATAGACACGGCGCTCTGCCGTGCTCCGACGCCTCGTCGCCGCAATCGCTCTCTAAATGA 723 60.86 MSANPSTSGGGGPGTASAGGGVGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELTYLQAHLATLELPSPPNPPPPPPPPSFPAQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDPRQFAGGGGGSSTAAGEGDLQALARELLHRHGALPCSDASSPQSLSK 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 382522 385349 - CePI673135_06g000380.1 Cec06g0038 204775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0038 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 26 147 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cec06g0038 240 MobiDBLite consensus disorder prediction 135 155 - -
Cec06g0038 240 Pfam Lateral organ boundaries (LOB) domain 29 127 IPR004883 -
Cec06g0038 240 MobiDBLite consensus disorder prediction 185 219 - -
Cec06g0038 240 MobiDBLite consensus disorder prediction 134 158 - -
Cec06g0038 240 ProSiteProfiles LOB domain profile. 28 130 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0038 Cec-Chr6:382522 Cec07g0122 Cec-Chr7:1292853 1.30E-42 dispersed
Cec06g0038 Cec-Chr6:382522 Cec06g0039 Cec-Chr6:400104 3.90E-39 tandem
Cec07g0386 Cec-Chr7:3946450 Cec06g0038 Cec-Chr6:382522 2.40E-35 transposed
Cec09g0783 Cec-Chr9:7182849 Cec06g0038 Cec-Chr6:382522 5.00E-39 transposed
Cec10g1600 Cec-Chr10:30392734 Cec06g0038 Cec-Chr6:382522 1.60E-37 transposed
Cec05g0256 Cec-Chr5:2098141 Cec06g0038 Cec-Chr6:382522 1.60E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29708 PF03195 LOB 2.70E-38 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0038 K21994 - csv:101220603 378.637