Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0039 ATGACCCACACACACACACCAATTGGCCTACATCAAGAGGCCCTGATGAGTGGCGGCGGCCAAGGCGGAGGGCCTTGCGGCGCGTGCAAGTTTTTGAGGAGAAAGTGTGTGAAAGGGTGCATTTTTGCACCCTATTTCGACTCCGAGCAAGGCGCCGCCCACTTTGCCGCCGTGCATAAGGTGTTCGGAGCTAGCAATGCCTCTAAGCTCCTCCACCGCATCCCGCCTCCCAAGCGTCTCGACGCTTGCGTTACTCTTTGTTACGAGGCTCTTGCTAGGGTTCGAGACCCTGTCTATGGTTGTGTTGCTCAAATTTTCACCCTCCAACAACAGGTAGTGAATTTGCAGGCAGAGCTAGCATACATTCAGGCCAAACTTGCCACCTTGCAGCGGCTGTTTCCGCCACCGTCACAGGACGCATCACTGCCCGCTCGCGACGCCCTGCTCCCGGAAACGATACCGGGCTCCGACATGGGTTTGATGTCCAACGTTCCAATGCTCCTTGACCCCCTCCAAACGCAGCTAGGTTATAACGAAATGACAAATAATTTTCCGAACCCAATTTATCATCAAGATCAGATGGATGAAGACGGCGATCTTCAGTCTTTGGCTCGAGAATTGGTTTCGAGGTACTTGCCCGAAGTACGACACCGGCCGCCGTGCTCACAGATTTAA 675 54.07 MTHTHTPIGLHQEALMSGGGQGGGPCGACKFLRRKCVKGCIFAPYFDSEQGAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVAQIFTLQQQVVNLQAELAYIQAKLATLQRLFPPPSQDASLPARDALLPETIPGSDMGLMSNVPMLLDPLQTQLGYNEMTNNFPNPIYHQDQMDEDGDLQSLARELVSRYLPEVRHRPPCSQI 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 400104 403415 + CePI673135_06g000390.1 Cec06g0039 204776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0039 224 Pfam Lateral organ boundaries (LOB) domain 25 123 IPR004883 -
Cec06g0039 224 ProSiteProfiles LOB domain profile. 24 126 IPR004883 -
Cec06g0039 224 PANTHER LOB DOMAIN CONTAINING PROTEIN 21 141 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cec06g0039 224 Coils Coil 112 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0039 Cec-Chr6:400104 Cec07g0123 Cec-Chr7:1302773 1.20E-34 dispersed
Cec06g0038 Cec-Chr6:382522 Cec06g0039 Cec-Chr6:400104 3.90E-39 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29709 PF03195 LOB 2.70E-36 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0039 - - - 0.0