Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0049 ATGGGCCCAGTTTATCGTTACTATACGGGCTACGGCCCATTAAAGCGCATGTTAGAAAGCCTTCAGTGTCCCACATCGGAAGCCCAACCATTGCCATCAATCGTGCTGATCGTGCAAGCGGTGGAACTGCGTAGTGAGCTAAACAAAGAAACTCAGCGACACGAGGCGACGAGTAGATCTGGGCGTGTGCGAGCAGCATTGAGGATGGTCGTTGCGCGCTCCCGCATCGGCCCCAACATCCATCGCTTCGCCCAGTTGCCCTCTCCCTTCACTCCCAACCAGCATTCACCTCTTTCTTCCTCAGATCTACACTCTCCGTCGCCTTCACTCTCAGGTCCCAATTTGCTGGTTTGTAATCCATTTTGTTTCGATCTCTGTCTGGTGCCCTTCGTTCAATCTCGCAGGAGTCTTTCGCGAGTGTGTCAGAATGAAGGAAAGCTGCATGTGCTGAATTTGGGAATTTGTGATGTTGTGCTTCGTAAAGCTTTAATTGTGTTTATTGGAAGAATTTTGGCATTTCTTTCAAAAGCTAGTTTCAGAGAATCCCCCTTGAAAGAGAAGCATGGCTATGTGTTTCCTTTGAGATGGGGAGGGAAGTGGAAGCTTTTCTTTCAGAGGCCTATCTATGAAAGGGAAATTGGGGGATTAACCAACCTCATCATCCTTTTGGAGAAGCAGAAAACAAGTAACCTTTCTAATCAACAACTATGGACATTACACCTGTCTGGAATCTCACTGACAGTTTGGTCTTCCATAACGAAGAGCAGTCAAATGGATGGACCAACTGGTCGCAGTGGTGGTGGCATGGATATGAATTTACCGAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCAGAGCATGCTTTAACTGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGAAAGATAAAAAACTTGGACATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGACTGTTCATGCATCCGCACATTATACGGCTCTATGAGGTTATAGAGACCCCAGCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGGGAGCTCTTTGACTATATTGTAGAAAAGGGAAGGTTGCAGGAGGATGAAGCCCGTAATTTTTTCCAACAGATTATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGATCTCAAGCCGGAGAACTTGCTTCTTGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTCTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCAGAGGTCATCTCTGGGAAATTATACGCTGGACCTGAAGTAGATGTGTGGAGTTGTGGTGTGATTTTGTATGCTCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATTCCTAGCATGCTGGTGGTTGACCCAATGAAACGCATCACGATCCCTGAGATTCGGCAGCACCCATGGTTTCAGGCTCATCTTCCACGCTATTTAGCCGTGCCTCCACCTGATACAATGCAACAGGCAAAAAAGATTGATGAAGACATTCTTCAGGAAGTTGTAAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTCGTAACCGTATTCAAAATGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTCCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGATTCAACCATATGCACCCTGGTGATCCTACAAGTCCTGCTGTAGGACACCGTCTTCCTGGGTATATGGATTACCAAGGAATGGGCTTAAGATCACAGTTTCCCGTTGAGAGGAAGTGGGCCCTGGGATTACAGTCTCGAGCTCATCCTCGTGAAATTATGACCGAAGTTCTTAAAGCCCTACGAGAGCTCAATGTGGCTTGGAAGAAGATTGGGCACTATAATATGAAATGTAGATGGTTGCCTGGAATTCCAGGCCATCATGAAGGCATGATTAACAACCCTGTGCATAGTAATCATTACTTTGGGGACGAGTCTACCATCATTGAAAACGACGGCGTTGTAAAATCGCCGAATGTTATTAAGTTTGAAGTACAGCTGTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCTTTCCTTGCCCAGCTCCGATTGCTCCTTGGCTGTCGTTTTCTTGTCGTCAAGATTCCCAAAATCCTTTCCTCTTTGGGTACGTTGACGTGTTTTGGCAAAACAGCATTTGTCTTGTTGGAGAAGAAATTTGAAGAAAACCCTTGCTTCTTCATCTCTGATCCCTTTTACACTGCAAAGATCTTGTTCTTCCTCTCAATTTGTGAACTCGCAAAGATGACTCAAGACGCCGAGATGAAAGAGCTTCCTGCTCCATTGTCGTCTTCTTCCTCTTCAGCTTCCCCCTCAACTCTACAACATTTGAAAGAGATTGTGTCGCTCATTGAGACCGGTGCCTATGCTCGGGAGGTTCGGCGGATTGTTCGTGCCATTCGTCTGACTATGGCGTTGAGGCGGAAGTTGAAGGCTTCTGTCGTTTCTCAATTTCTGAATCTTGTTCTCCCCCCAGGGTCCGAGGTGCACACTAGGTTATCGTCATTTCTTCCAAAGGAGGATGACTGTGAAATGGATGTTGACACGGCAACACAAGCTCCTGCCAAACACCCTTTGCCCGAGATAGAGATATTTTGCTACTTGATTGTGCTAATATTTTTGATTGATCAGAAGAAATATGCTGATGCTAAAGCTTGCGCCTCCGCGAGCATTGCTCGGGTTAAGAACCTTAATAGGAGAACAGTCGATGTTTTAGCATCCAGGCTCTACTTCTATTACTCCCTCAGCTATGAACTCACTGGCGATCTTGCTGAAATAAGGGGCAACCTCCTAGCCCTGCATCGCATTGCAACCTTGCGCCATGATGAATTGGGTCAGGAAACTCTCCTTAACCTTCTACTTCGTAATTACCTCCACTACAACCTTTATGATCAAGCTGAGAAGTTGAGGTCCAAGGCACCCCGGTTTGAAGCTCACTCAAATCAGCAGTTCTGTAGGTACCTATTTTACCTTGGCAAGATCAGGACTATTCAGCTGGAGTACACAGATGCAAAGGAGTCTCTTCTACAAGCTGCTCGGAAAGCACCCATTGCAGCTCTTGGTTTTCGAGTGCAATGCAACAAATGGGCAATCATTGTTCGCTTGCTGCTAGGAGAAATCCCTGAGAGGACCGTTTTCATGCAGAAAGGCATGGAGACAGCTCTGAGGCCATACTTTGAACTTACAAATGCTGTGAGAATTGGTGACTTGGAGCTTTTCAGGACAGTTGCCGAGAAGTTCTCTGGCACTTTCAGCTCAGATCGAACTAACAACTTGATCGTGAGGCTGCGACACAATGTCATTAGGACTGGGCTTCGCAACATTAGCATTTCTTATTCACGAATTTCTCTGGTTGATGTTGCTAAAAAGCTTAGGTTGGACTCAGCAAATCCTGTTACTGATGCTGAGAGTATCGTCTCCAAGGCAATCCGAGATGGAGCAATTGATGCAACAGTCGATCATGGGAATGGATGGATGGTATCAAAGGAGACTGGTGATATTTACTCTACCAATGAACCTCAGCTTGCTTTCAACTCGAGGATTGCGTTTTGCCTGAATATGCATAATGAGGCAGTTCGTGCCCTTCGGTTTCCACCAAATTCACACAAGGAAAAAGAAAGCGCCGAGAAAAGAAGAGAAAGACAACAGCAGGAGCAAGAACTTGCAAAACACATAGCCGAAGAAGATGACGACGACTTTTAG 3963 45.29 MGPVYRYYTGYGPLKRMLESLQCPTSEAQPLPSIVLIVQAVELRSELNKETQRHEATSRSGRVRAALRMVVARSRIGPNIHRFAQLPSPFTPNQHSPLSSSDLHSPSPSLSGPNLLVCNPFCFDLCLVPFVQSRRSLSRVCQNEGKLHVLNLGICDVVLRKALIVFIGRILAFLSKASFRESPLKEKHGYVFPLRWGGKWKLFFQRPIYEREIGGLTNLIILLEKQKTSNLSNQQLWTLHLSGISLTVWSSITKSSQMDGPTGRSGGGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNHMHPGDPTSPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINNPVHSNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRLLLGCRFLVVKIPKILSSLGTLTCFGKTAFVLLEKKFEENPCFFISDPFYTAKILFFLSICELAKMTQDAEMKELPAPLSSSSSSASPSTLQHLKEIVSLIETGAYAREVRRIVRAIRLTMALRRKLKASVVSQFLNLVLPPGSEVHTRLSSFLPKEDDCEMDVDTATQAPAKHPLPEIEIFCYLIVLIFLIDQKKYADAKACASASIARVKNLNRRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMETALRPYFELTNAVRIGDLELFRTVAEKFSGTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSANPVTDAESIVSKAIRDGAIDATVDHGNGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 1320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 457509 474481 - CePI673135_06g000490.1 Cec06g0049 204786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0049 1320 ProSitePatterns Protein kinases ATP-binding region signature. 282 305 IPR017441 GO:0005524(InterPro)
Cec06g0049 1320 SUPERFAMILY Protein kinase-like (PK-like) 273 546 IPR011009 -
Cec06g0049 1320 Coils Coil 1287 1314 - -
Cec06g0049 1320 Pfam UBA/TS-N domain 550 586 IPR015940 -
Cec06g0049 1320 Pfam Proteasome regulatory subunit C-terminal 1253 1319 IPR013586 GO:0000502(InterPro)|GO:0030234(InterPro)|GO:0042176(InterPro)
Cec06g0049 1320 FunFam Non-specific serine/threonine protein kinase 267 606 - -
Cec06g0049 1320 MobiDBLite consensus disorder prediction 1284 1313 - -
Cec06g0049 1320 ProSiteProfiles Protein kinase domain profile. 276 528 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g0049 1320 Pfam Kinase associated domain 1 729 771 IPR001772 -
Cec06g0049 1320 Gene3D - 1087 1272 - -
Cec06g0049 1320 SUPERFAMILY Winged helix DNA-binding domain 1180 1254 IPR036390 -
Cec06g0049 1320 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 836 1316 IPR050756 GO:0006511(PANTHER)|GO:0008541(PANTHER)
Cec06g0049 1320 CDD AMPKA_C 646 769 - -
Cec06g0049 1320 CDD STKc_AMPK_alpha 273 528 - -
Cec06g0049 1320 CDD UBA_SnRK1_plant 550 590 - -
Cec06g0049 1320 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 723 771 IPR001772 -
Cec06g0049 1320 ProSiteProfiles PCI domain profile. 1072 1253 IPR000717 -
Cec06g0049 1320 ProSitePatterns Serine/Threonine protein kinases active-site signature. 395 407 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g0049 1320 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 1178 1271 IPR000717 -
Cec06g0049 1320 FunFam Non-specific serine/threonine protein kinase 652 770 - -
Cec06g0049 1320 Gene3D Transferase(Phosphotransferase) domain 1 269 607 - -
Cec06g0049 1320 FunFam 26S proteasome non-ATPase regulatory subunit 3 953 1276 - -
Cec06g0049 1320 Gene3D Kinase associated domain 1, KA1 652 770 - -
Cec06g0049 1320 SUPERFAMILY KA1-like 585 770 IPR028375 -
Cec06g0049 1320 MobiDBLite consensus disorder prediction 1284 1320 - -
Cec06g0049 1320 Pfam Protein kinase domain 276 528 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g0049 1320 SMART uba_6 551 588 IPR015940 -
Cec06g0049 1320 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 549 589 IPR015940 -
Cec06g0049 1320 Pfam PCI domain 1170 1249 IPR000717 -
Cec06g0049 1320 SMART serkin_6 276 528 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g0049 1320 SMART PCI/PINT associated module 1007 1178 - -
Cec06g0049 1320 FunFam Non-specific serine/threonine protein kinase 266 355 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0423 Cec-Chr2:3995059 Cec06g0049 Cec-Chr6:457509 9.90E-252 dispersed
Cec02g2220 Cec-Chr2:39610205 Cec06g0049 Cec-Chr6:457509 3.90E-39 dispersed
Cec06g0049 Cec-Chr6:457509 Cec08g1221 Cec-Chr8:24123399 4.70E-70 dispersed
Cec06g0049 Cec-Chr6:457509 Cec11g0064 Cec-Chr11:790418 3.50E-190 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72053 PF00069 Pkinase 1.70E-79 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0049 K07198 - csv:101211720 1011.13