Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0054 ATGTTGAATGGATCCTTGGTTTTGTCCAAGAGTTGCAGCCGATCAAAGTTGCGCCAGGGGGTTCTGTTAGTTTTTGTGACTCGTGTGCCAAAAAAGGGAAGTGAGAGGTCGTTGCGCGCTCCCGCATCGGTCCCAACATCCATCGGTACGCCCCGTTGCCCTCTCCCTTCACTCCCAACCAGCATTCACCTCTTTCTTCCTCAGATCTACACTCTCCATCGCCCTGACTCTCAGTTGAAGATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATTGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATTCAGGAGAGAGAATACAACAAACAAAAGAGTTGCTTGCTTCTTGTGAAAGCATTGAATGGCAGGTGGACGAGTTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCATCTTGGTATGGCATTGATGATGCAGAACTTGAAAAACGAAGGAGATGGACGAGTACTGCTAGAACACAGGTTGGAAATGTTAAGAAAGTAGTAGGAGCTGGGAAGGAGCAAACGGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACATGAAACAGACAGATCAAACTTATATACAGCCAACCAAGCAAATGATGACTTCATCACATCCGAATCAGATAGACAGCTGCTTCTAATAAAGCAGCAGGACGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACACGAAGAGCTCCTTGCACAGGATAAAATTATCGACGACCTAGGAATGGAAATGGACAGTACATCAAATCGTCTTGATTTTGTTCAGAAAAAAGTAGCAGTGGTCATGAAGAAGGCCAGCGCCAAGGGGCAGATAATGATGATATTGTTCTTGGTGGCTTTGTTCATCATCCTTTTTGTGTTGGTGTTCCTCACCTAG 981 45.57 MLNGSLVLSKSCSRSKLRQGVLLVFVTRVPKKGSERSLRAPASVPTSIGTPRCPLPSLPTSIHLFLPQIYTLHRPDSQLKMPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDSGERIQQTKELLASCESIEWQVDELDKAIAVAARDPSWYGIDDAELEKRRRWTSTARTQVGNVKKVVGAGKEQTGTASASGMRRELMRLPNAHETDRSNLYTANQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKIIDDLGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLVFLT 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 507353 512208 - CePI673135_06g000540.1 Cec06g0054 204791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0054 326 FunFam Syntaxin 10 83 185 - -
Cec06g0054 326 CDD SNARE_NTD_AtSYP61-like 85 182 - -
Cec06g0054 326 CDD SNARE_Qc 237 294 - -
Cec06g0054 326 ProSitePatterns Syntaxin / epimorphin family signature. 240 279 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cec06g0054 326 PANTHER SYNTAXIN 88 313 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cec06g0054 326 FunFam syntaxin-61 isoform X1 237 298 - -
Cec06g0054 326 Gene3D - 82 184 - -
Cec06g0054 326 Pfam SNARE domain 271 322 IPR000727 -
Cec06g0054 326 SMART tSNARE_6 229 296 IPR000727 -
Cec06g0054 326 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 234 296 IPR000727 -
Cec06g0054 326 SUPERFAMILY SNARE fusion complex 233 296 - -
Cec06g0054 326 Pfam Syntaxin 6, N-terminal 86 179 IPR015260 GO:0016020(InterPro)|GO:0048193(InterPro)
Cec06g0054 326 SUPERFAMILY t-snare proteins 85 180 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cec06g0054 326 Gene3D - 241 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0054 Cec-Chr6:507353 Cec10g0467 Cec-Chr10:5606053 5.80E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0054 K08500 - csv:101212527 420.624