Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec06g0054 | ATGTTGAATGGATCCTTGGTTTTGTCCAAGAGTTGCAGCCGATCAAAGTTGCGCCAGGGGGTTCTGTTAGTTTTTGTGACTCGTGTGCCAAAAAAGGGAAGTGAGAGGTCGTTGCGCGCTCCCGCATCGGTCCCAACATCCATCGGTACGCCCCGTTGCCCTCTCCCTTCACTCCCAACCAGCATTCACCTCTTTCTTCCTCAGATCTACACTCTCCATCGCCCTGACTCTCAGTTGAAGATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATTGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATTCAGGAGAGAGAATACAACAAACAAAAGAGTTGCTTGCTTCTTGTGAAAGCATTGAATGGCAGGTGGACGAGTTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCATCTTGGTATGGCATTGATGATGCAGAACTTGAAAAACGAAGGAGATGGACGAGTACTGCTAGAACACAGGTTGGAAATGTTAAGAAAGTAGTAGGAGCTGGGAAGGAGCAAACGGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACATGAAACAGACAGATCAAACTTATATACAGCCAACCAAGCAAATGATGACTTCATCACATCCGAATCAGATAGACAGCTGCTTCTAATAAAGCAGCAGGACGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACACGAAGAGCTCCTTGCACAGGATAAAATTATCGACGACCTAGGAATGGAAATGGACAGTACATCAAATCGTCTTGATTTTGTTCAGAAAAAAGTAGCAGTGGTCATGAAGAAGGCCAGCGCCAAGGGGCAGATAATGATGATATTGTTCTTGGTGGCTTTGTTCATCATCCTTTTTGTGTTGGTGTTCCTCACCTAG | 981 | 45.57 | MLNGSLVLSKSCSRSKLRQGVLLVFVTRVPKKGSERSLRAPASVPTSIGTPRCPLPSLPTSIHLFLPQIYTLHRPDSQLKMPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDSGERIQQTKELLASCESIEWQVDELDKAIAVAARDPSWYGIDDAELEKRRRWTSTARTQVGNVKKVVGAGKEQTGTASASGMRRELMRLPNAHETDRSNLYTANQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKIIDDLGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLVFLT | 326 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 507353 | 512208 | - | CePI673135_06g000540.1 | Cec06g0054 | 204791 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec06g0054 | 326 | FunFam | Syntaxin 10 | 83 | 185 | - | - | |
Cec06g0054 | 326 | CDD | SNARE_NTD_AtSYP61-like | 85 | 182 | - | - | |
Cec06g0054 | 326 | CDD | SNARE_Qc | 237 | 294 | - | - | |
Cec06g0054 | 326 | ProSitePatterns | Syntaxin / epimorphin family signature. | 240 | 279 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cec06g0054 | 326 | PANTHER | SYNTAXIN | 88 | 313 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cec06g0054 | 326 | FunFam | syntaxin-61 isoform X1 | 237 | 298 | - | - | |
Cec06g0054 | 326 | Gene3D | - | 82 | 184 | - | - | |
Cec06g0054 | 326 | Pfam | SNARE domain | 271 | 322 | IPR000727 | - | |
Cec06g0054 | 326 | SMART | tSNARE_6 | 229 | 296 | IPR000727 | - | |
Cec06g0054 | 326 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 234 | 296 | IPR000727 | - | |
Cec06g0054 | 326 | SUPERFAMILY | SNARE fusion complex | 233 | 296 | - | - | |
Cec06g0054 | 326 | Pfam | Syntaxin 6, N-terminal | 86 | 179 | IPR015260 | GO:0016020(InterPro)|GO:0048193(InterPro) | |
Cec06g0054 | 326 | SUPERFAMILY | t-snare proteins | 85 | 180 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cec06g0054 | 326 | Gene3D | - | 241 | 305 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec06g0054 | Cec-Chr6:507353 | Cec10g0467 | Cec-Chr10:5606053 | 5.80E-06 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec06g0054 | K08500 | - | csv:101212527 | 420.624 |