Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0130 ATGGAGTTGGATGGCATCGAAGGTATGCCATCCATGGATGTGATGGATGAGGAAGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGAATCAACAATAACGACAATCCCACCACCACAAGTGTCCACGAGCTTCTTGAATGTCCCGTTTGCACCAATTCTATGTATCCCCCAATTCATCAGTGTCCCAATGGACATACACTCTGTTCTTCATGTAAAACAAAGGTAGACAACCGTTGCCCGACGTGCAGACAAGAGCTCGGTGATATCAGATGTCTCGCATTAGAAAAAATAGCTGAATCACTTAAACTGGCTTGTAAATTTTGCACATTTGGGTGCCAGGAGATCTTGCCTTACTACAGCAAACTCAAACACGAATCTGCTTGTTACTATAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAATTGATGGGGATATTCCTTTCCTTGTTTCTCATCTTCGGGACGATCACAAGGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAAGCTAATCCATGTGAAGTTGAAAACGCTACATGGATGCTAACAGTCTTCCACTGTTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCAGTTTACATGGCATTTCTCCGATTCATGGGGGACGAAACAGAAGCCCGAAACTACAGTTACAGCCTCGAGGTCGGTGGAAATGGCAGGAAGCTGATATGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTTAGAGACAGCCATGACGGCCTCATTATACAACGAAACATGGCACTCTTCTTCTCGGGAGGGGAAAGGAAAGAGCTGAAGCTGCGGATCACGGGACGGATTTGGAAAGAACAAAATAAACAGTAA 915 45.46 MELDGIEGMPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTKVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCQEILPYYSKLKHESACYYRPYTCPYAGSDCPIDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1279843 1282572 + CePI673135_06g001300.1 Cec06g0130 204867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0130 304 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 53 88 IPR049548 -
Cec06g0130 304 SUPERFAMILY TRAF domain-like 106 298 - -
Cec06g0130 304 CDD RING-HC_SIAHs 51 89 - -
Cec06g0130 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 294 IPR008974 GO:0005515(InterPro)
Cec06g0130 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 162 294 - -
Cec06g0130 304 SUPERFAMILY RING/U-box 47 93 - -
Cec06g0130 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 105 IPR013083 -
Cec06g0130 304 Pfam Sina, zinc finger 102 177 - -
Cec06g0130 304 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270(InterPro)
Cec06g0130 304 FunFam E3 ubiquitin-protein ligase SINAT3 103 161 - -
Cec06g0130 304 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Cec06g0130 304 Pfam Sina, TRAF-like domain 197 294 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cec06g0130 304 CDD Sina 167 295 - -
Cec06g0130 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 160 IPR013083 -
Cec06g0130 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 296 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1067 Cec-Chr5:9442992 Cec06g0130 Cec-Chr6:1279843 6.70E-143 dispersed
Cec05g1254 Cec-Chr5:11954764 Cec06g0130 Cec-Chr6:1279843 7.40E-23 dispersed
Cec05g2910 Cec-Chr5:39200129 Cec06g0130 Cec-Chr6:1279843 3.90E-126 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0130 K04506 - csv:101209363 647.121