Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0166 ATGACGCAGCCACAGCTGCCCATCAGCATTAGAAGAAACTATAATGAAACCGATAATGATCAGTTGGTGATTGAGGTGAAGGAAAATCTCAATAAACTGGTGGAATCAGTACTTGCTATGGACGAGTATGGATCATTAGGACAAATCGTCAAACCTTCGATCTACAGAATACCAAAATTCATGAGAGAAGTTCATCCGAAAGCGTTCGAGCCACAGTTGGTGTCGTTTGGGCCATACCACCATGGGAATCCACAATGTGCTTCAATGGAACTGGAAAAACAGAAAGCGTTTCGCCGTTTCAAAACCGAGTACCCAGAGATGTTAGAGTCGATTGTGAGGACTGTGTCTAACAATTTGGAAAATCTGTTGGGAGCATACGATATGCTTGAGGATAAATGGACGAAACATCCTGCCAAGTTCTTGGAGGTGTTGATTGTGGATGGCTGTTTCATGCTGAGTTTCTTCAAGAAATGTCCCCCCTCCCTAAGTTCTATGAGTTGGGATATAAAGCGGGACATGCTTCTGCTTGAGAATCAACTACCCATGCAGCTTCTTGAAGATTTGCATTCCATTTTACCAAACATGGATGGAAGACTGACATGGTTTATATGCAATTCAATGTGCTTCAAATTAGAGGAAGCAGTATCAATGGGAGGAGACTTGCACATTTTGGATATGTATAGAATGTCACTATTGGGTACTCCGATATTAGAGAATAAGGATGGTAGTATGGAGAGAAAAACGAAGAAATCCGGGCCAGAATATCAAGTGATTCGACATGCAACACAGCTTCGTGACGCGGGGATAGATTTCCAGCAAAGCGGTACAAAGAGCCTTATTGACGTGAGTTTTGACTCCAAAAAAGGGGTGCTGAAAATTCCAAAATTAGTGGTGGACGATGATAGTGAAGCCAATTTATTAAATGTGATGGCATTTGAGAAACTACATGAGGAGGCTGGAAGCGAAGTCACATCTTTCGTAGTATTGATGAACAATTTGATAGACGTGGATGAAGATGTGAATTTGCTGTCTTCTAAAAATATATTAGCTAACGCGCTTGGGGATGATCAAAGTGCGGCGGAGTTGTTTGGTTCGCTTGGGAAAGGGGCGGCTATGGATTTGGAAAGCCACATTACAGAGGTGCATCACCAGGTGAATCTGCATTGCCGCCGGCCATGGAATAAATGGTGTGCAAGTCTCAAACATGATTACTTTCATAACCCATGGGCCATTATCTCACTCGTTGCCGCTATTCTCGGTTTCGCCATCCTTATTGTTCAAGCCGTCTACCAAATTGTTGATTACTACCGAGGGAAATAA 1320 42.8 MTQPQLPISIRRNYNETDNDQLVIEVKENLNKLVESVLAMDEYGSLGQIVKPSIYRIPKFMREVHPKAFEPQLVSFGPYHHGNPQCASMELEKQKAFRRFKTEYPEMLESIVRTVSNNLENLLGAYDMLEDKWTKHPAKFLEVLIVDGCFMLSFFKKCPPSLSSMSWDIKRDMLLLENQLPMQLLEDLHSILPNMDGRLTWFICNSMCFKLEEAVSMGGDLHILDMYRMSLLGTPILENKDGSMERKTKKSGPEYQVIRHATQLRDAGIDFQQSGTKSLIDVSFDSKKGVLKIPKLVVDDDSEANLLNVMAFEKLHEEAGSEVTSFVVLMNNLIDVDEDVNLLSSKNILANALGDDQSAAELFGSLGKGAAMDLESHITEVHHQVNLHCRRPWNKWCASLKHDYFHNPWAIISLVAAILGFAILIVQAVYQIVDYYRGK 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1695080 1697689 - CePI673135_06g001660.1 Cec06g0166 204903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0166 439 Coils Coil 112 132 - -
Cec06g0166 439 PANTHER BNAC04G53230D PROTEIN 51 436 - -
Cec06g0166 439 Pfam Plant protein of unknown function 54 421 IPR004158 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0166 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1395 Cec-Chr4:33587465 Cec06g0166 Cec-Chr6:1695080 1.50E-51 dispersed
Cec06g0166 Cec-Chr6:1695080 Cec08g1358 Cec-Chr8:25540196 5.10E-13 dispersed
Cec06g0166 Cec-Chr6:1695080 Cec06g0167 Cec-Chr6:1703083 2.50E-97 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1387 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00150 Cam06g0064 Cec06g0166 Cco06g0160 Clacu06g0161 Cmu06g0158 Cre06g0932 . . . . . . Chy11g01840 Cme11g02376 . . . . . . . . Sed09g0351 . . . . . . Cpe17g00949 . Bhi12g02379 Tan06g1430 Cmetu11g0377 . Hepe03g1179 . . . . . . . . . Lsi09g01778 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001248 0 1 0 0 0 1 6 2 2 4 1 2 2 2 4 8 1 0 5 1 3 1 1 5 2 4 2 10 3 0 73