Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0172 ATGCCTTTTATCTTCCTCTTCTCTTCCTCCTCCTTGCTTCTTCTTCATTTTTCTTTTTCTAGAAAAAGAAAAATTATTACACACACACACACACACACACATATATATATATATACAGTCCTTGTGGATCGGCGGCATGGAAAGCGAGCACTTCCTTGGGAAGCACCGGAGGAGAAAGAAAGAGATCAAAATAATGAATTCCCTTCTTCTTGGTCCCAATCCAGCTTCAATTATTCCCCCAATTTCAATCCACAAACACTAACTCAACTCCCTCAATCCGCTCCTCTTCAAAATCAAGAAACAGAAAGTGGGAGGAAGCGTCATTATAGAGGCGTAAGACAAAGACCATGGGGAAAATGGGCAGCGGAGATTCGTGACCCGAAGAAAGCGGCTAGAGTTTGGCTTGGAACTTTCGACACTGCCGAGGCTGCTGCCATTGCTTATGATAACGCCGCTTTGAGATTTAAAGGAACCAAAGCCAAGCTTAATTTCCCTGAACGAGTTCAAGCCAATCCTTCTGACTTTGGCTTTCTTCCCTCCGCTGCTTCTTCTGCTGCTCCACCTCCCCAAGCCGCCGTGGCTTCATTTTCATCTACTTCTCTTTCTCTTCCGCCGCCGTTGTCTGAGGAAGAAGCTTTCCCTGGACTTCATCAGTACGCCCAACTTCTCTCTAGCACCGACGCTGATTTCCCTTATTATTCTTCCACTCTTCTTCTCAACCAACAACAGACCCATTACCCTTTTTCTTCTTCTTCTTCTACACAACCACACCAACAAGATCAGGATCACTACGGCAAAGATTTCGGCACCGGTGGCTCAACCAATTAG 828 45.53 MPFIFLFSSSSLLLLHFSFSRKRKIITHTHTHTHIYIYTVLVDRRHGKRALPWEAPEEKERDQNNEFPSSWSQSSFNYSPNFNPQTLTQLPQSAPLQNQETESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNFPERVQANPSDFGFLPSAASSAAPPPQAAVASFSSTSLSLPPPLSEEEAFPGLHQYAQLLSSTDADFPYYSSTLLLNQQQTHYPFSSSSSTQPHQQDQDHYGKDFGTGGSTN 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1728157 1731060 - CePI673135_06g001720.1 Cec06g0172 204909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0172 275 PANTHER DNA-BINDING DOMAIN 71 249 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cec06g0172 275 MobiDBLite consensus disorder prediction 244 275 - -
Cec06g0172 275 SUPERFAMILY DNA-binding domain 108 166 IPR016177 GO:0003677(InterPro)
Cec06g0172 275 MobiDBLite consensus disorder prediction 244 259 - -
Cec06g0172 275 MobiDBLite consensus disorder prediction 66 100 - -
Cec06g0172 275 Gene3D AP2/ERF domain 107 167 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0172 275 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0172 275 MobiDBLite consensus disorder prediction 52 112 - -
Cec06g0172 275 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0172 275 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0172 275 FunFam Ethylene-responsive transcription factor 2 107 166 - -
Cec06g0172 275 SMART rav1_2 108 171 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0172 275 CDD AP2 108 166 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g0172 275 Pfam AP2 domain 108 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0172 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0101 Cec-Chr2:1045363 Cec06g0172 Cec-Chr6:1728157 4.60E-28 dispersed
Cec06g0172 Cec-Chr6:1728157 Cec08g0740 Cec-Chr8:19134982 3.90E-27 dispersed
Cec06g2035 Cec-Chr6:33433079 Cec06g0172 Cec-Chr6:1728157 2.90E-30 transposed
Cec07g1316 Cec-Chr7:28686603 Cec06g0172 Cec-Chr6:1728157 2.40E-17 transposed
Cec08g0269 Cec-Chr8:5345740 Cec06g0172 Cec-Chr6:1728157 2.20E-26 transposed
Cec05g0501 Cec-Chr5:3996755 Cec06g0172 Cec-Chr6:1728157 2.10E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1351 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00156 Cam06g0060 Cec06g0172 Cco06g0167 Clacu06g0166 Cmu06g0162 Cre06g0938 . . . . . . Chy11g01833 Cme11g02369 Blo02g00209 . . . Bpe14g00816 . . . Sed09g0340 . . . . . . . . Bhi12g02385 Tan06g1437 Cmetu11g1306 . Hepe03g1176 . . . . . . . . . Lsi09g01770 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003032 0 2 2 0 1 3 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 3 2 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29715 PF00847 AP2 1.10E-13 CL0081 Cec TF