Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0214 ATGTATTGGAAACTCAGAGGCATTGGTAATATGGATGAAAGGTCTACGGATGACATGAAAGGAACTAGAGTTGCTTTGATGGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGTAGCCCAAGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCGTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTGCCATTTGGCAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAACACGCCTCTTTGCAGTGGCAACTCACAGTTCGACTTTACTGACAGAAGAAAAAGTATGTTGCCCGGGTCGTTGGCTTTTGATTACAAAGAAAAACAACTTGCAATCTCTTGCATTCCCATAGGACTGTTTCCCAAATCATCTGATACTCAGCCATTTCTCAATGTTGGATCCAGCAACGTAGGGAATGTTCAGAAAGTGCTCGGAAACGGATCAAATCGGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGAGCCAACCCAACCTCATCCCCCCAGCCAATTTCATCCACAGCGACGGTCTTGGCTTGGAGAGTGACCCCATTAATTCTGGTTTGGTCTCGGATGGTAGCAGCGATGCCAATATCCGGTGCTACTCAACGTTCCAGGACGGACCTGATGGATCATCTGTTGATTTATTCAGGTTTTGA 987 46.4 MYWKLRGIGNMDERSTDDMKGTRVALMESSSSRLMKRSRAPGSVAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPENNTPLCSGNSQFDFTDRRKSMLPGSLAFDYKEKQLAISCIPIGLFPKSSDTQPFLNVGSSNVGNVQKVLGNGSNRFFNSDCALSLLSTPVEPGEINLSSMSQPNLIPPANFIHSDGLGLESDPINSGLVSDGSSDANIRCYSTFQDGPDGSSVDLFRF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2224405 2226190 + CePI673135_06g002140.1 Cec06g0214 204951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0214 328 FunFam Squamosa promoter-binding-like protein 14 42 111 - -
Cec06g0214 328 Pfam SBP domain 50 123 IPR004333 GO:0003677(InterPro)
Cec06g0214 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 297 IPR044817 GO:0003677(InterPro)
Cec06g0214 328 Gene3D - 42 111 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec06g0214 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677(InterPro)
Cec06g0214 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1706 Cec-Chr1:31693043 Cec06g0214 Cec-Chr6:2224405 7.20E-33 dispersed
Cec05g1523 Cec-Chr5:19451192 Cec06g0214 Cec-Chr6:2224405 4.40E-36 dispersed
Cec06g0214 Cec-Chr6:2224405 Cec06g1994 Cec-Chr6:33168652 6.90E-39 dispersed
Cec03g0370 Cec-Chr3:4097623 Cec06g0214 Cec-Chr6:2224405 9.50E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29720 PF03110 SBP 7.40E-29 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0214 - - - 0.0