Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec06g0216 | ATGGGAAGAGGGAGAGTAGAATTGAAGAGAATAGAGAACAAGATCAATCGACAAGTGACCTTCGCAAAACGAAGAAATGGGCTTTTGAAGAAAGCTTATGAACTTTCGGTTCTTTGCGATGCTGAAGTTGCTCTCATCATCTTCTCTAATAGAGGAAAACTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACCCTAGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCTAATGTCTCCACAAGAGAGGCCCTGGAATTGAGCAGCCAGCAAGAGTATTTGAAGCTTAAAGCTCGCTATGAAGCTCTTCAACGATCCCAAAGGAATCTGTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAACTTGATATGTCACTGAAGCAGATCAGATCAACAAGGACTCAGTACATGCTGGATCAGCTCACTGATCTTCAACGTAAGGAGCATCTTCTTAATGAAGCAAACAAGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTTCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAGCAAGCTCAGCCTTCTGGTGATGCCTTCTTCCATCCTCTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATCCCATAACAGTGGTCACTGCTGGGCCAAGCATGAATAATTTCCTTCCAGGATGGTTGCCTTGA | 729 | 43.21 | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLVEGYQVNALQLNQSADDMMYGRQQAQPSGDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2287040 | 2292820 | + | CePI673135_06g002160.1 | Cec06g0216 | 204953 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec06g0216 | 242 | FunFam | MADS-box transcription factor 7 | 13 | 98 | - | - | |
Cec06g0216 | 242 | Pfam | K-box region | 91 | 173 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cec06g0216 | 242 | ProSiteProfiles | K-box domain profile. | 89 | 185 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cec06g0216 | 242 | Coils | Coil | 126 | 146 | - | - | |
Cec06g0216 | 242 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 191 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cec06g0216 | 242 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0216 | 242 | Gene3D | - | 13 | 80 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0216 | 242 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0216 | 242 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0216 | 242 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0216 | 242 | SUPERFAMILY | SRF-like | 2 | 76 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0216 | 242 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cec06g0216 | 242 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0216 | 242 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0216 | 242 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec06g0216 | 242 | Coils | Coil | 152 | 172 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec06g0024 | Cec-Chr6:275717 | Cec06g0216 | Cec-Chr6:2287040 | 9.90E-54 | dispersed | |
Cec06g0216 | Cec-Chr6:2287040 | Cec07g1716 | Cec-Chr7:32698954 | 1.70E-82 | dispersed | |
Cec03g0368 | Cec-Chr3:4084260 | Cec06g0216 | Cec-Chr6:2287040 | 9.10E-34 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29721 | PF01486 | K-box | 2.90E-26 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec06g0216 | - | - | - | 0.0 |