Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0221 ATGATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAAGTGTTCTTTATTTTACAGAATCATGAGAATTATCAGCTGACTGAGGAGGCTCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAACCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCATGTGATCACATTGTTCTTGTACACTACAGAGATATCAGTGAGGAGCGGACTAAATATATTGAAGTGAATTGTCATTCATTTGTGAGAAAATACAAGATATGGTTGACAGATTTGTTCCAACTTGAGGGAAGGTCTGGGACGGAATCGGGTTCTACTTCCAGTTCCTATTCGTCCCAAAATCTTGCTTCAGAATGTCAACAGACTTCATTGAGTCCAGGGTCTGTAGAAGTTACTTCTGACACTGGCAACCTTACTATTGGGTCAAATGGCATGGATGGGCAGTATGAAATATCCGAATTAAAAAGTTCAAACGATCGTGATGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCAGTTTTCAGTGCTCCAGCATTCAGAAAATACTGTCCATGATAATACTTGTACGTCTGAGATGCAAGATGCTAATGGAAAACATCACCATTACAATATGGCACACGAGTTTATATTCAGTGGTGAAGGAACTCAACCATGGGGTAATGCACTTGATTCTAGTAAGACAGCCATTCTTGAGTCTCAAGACAGACATTCTCTTCTATGGAATGAAAAAGAAAATCCATCATCACCTTCGACTGTTGACAATGAACAATGCAACTGGCTGTACAGCAGAGGAAAAACTTTTCCTATGCTAGGAGGCTGCACGTCTACAGAATATTCTTCACCACTAGACAATCATGATGTTAATACCAACTACAACATACCATTTCTTAAACAAGAACATGGCAATTCTTTTGAGGTTGATACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCACCAAATAGTACCGGAGCAGGGTCATGCCACCGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTTCAGAATCTCCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAACGGGGTACTTTGTTGCGAAGCACCTCCTCACCTCCCTGGGAAGGTTGCTCTCTGCATTACATCTGGCAATCAGGAACCCTGCAGTGAAGTCAGACAGTTTGAATATAAAATGAATGTTTGCACTCATTGCCAGTCACATTCGACTGGAGCTACGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAGTGCAGAAATCTGACAAGTTAGATTCTGAATTTTGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTACTAGTTGGTAGTGAAACTCCTTCTGGTGCCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCGACTCTGGCTTTCTTCTCAACAGAAAGATAGGCACGATCTAGCAGGCTGTTCCTTGTCCAAGAAAGAACAAGGCATTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCACTAAACCCAATTCTTGGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGGAGCATCAGCTGGCGCTGTAACTGATCCTAGTTCACAAGAACCAGATGGTAAAAGTGCAGCGTCTATCGCAGACATCCATGGACACAAGGGGCTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAAGTGAGCTTCCTAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACGGTAAATTGCATTTCAAATGGGAACCTCTCTTCCGCGGAGGACTATATCCCTCTAAAAAATACGTTAGCTGCAGTAAGGAATGCTGCTCAGGCAGCAGCCCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCAGAAAGAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATCGATCCAAATGACATTCAGGGGCTCTTAGCTATGTCAAAGTTGAATTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAGAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTCTTATTGCTACGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGTTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTCGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGGTTTCGTAGCGAGGTAGAATCCATTGATGAAAGTGAAGATGATGATATTATAACGGTGTTCCGCAAACAAAAGGTGGAAGGAACCATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTTGACTCTCCGGATGCTCGTCAGCAATATCATCGTATGCTTCAAGGATTTCGAGAAGCCAAGGCTGAACTTGATGGTGCCAGTAACAACCCTGCAGCATTGACTTCTCTCGCCGATGTTTCTGGAATGGAAGATTGTGCCACGTGGATTTTACTGCTACCTGTCACCCTCACAGCTGCGGTTACCCATGGCGGCCATACTTCTGAAAGCCTCAATCAATGGCGGCACCCTATACTGGAAGAGCTCGATTGA 3036 42.59 MMNAGYDINDLYREAQTRWLKPPEVFFILQNHENYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEERTKYIEVNCHSFVRKYKIWLTDLFQLEGRSGTESGSTSSSYSSQNLASECQQTSLSPGSVEVTSDTGNLTIGSNGMDGQYEISELKSSNDRDVSQALRRIEEQLSLNEDSLKDIGPFYGHEEGSNSNLIDYYEMSNEDQFSVLQHSENTVHDNTCTSEMQDANGKHHHYNMAHEFIFSGEGTQPWGNALDSSKTAILESQDRHSLLWNEKENPSSPSTVDNEQCNWLYSRGKTFPMLGGCTSTEYSSPLDNHDVNTNYNIPFLKQEHGNSFEVDTSLIVAQVQKFTIHQIVPEQGHATESTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVALCITSGNQEPCSEVRQFEYKMNVCTHCQSHSTGATKSPEELLLLVRLVQLLLSDSSVQKSDKLDSEFWSNNLKAGDDQWSSLIEALLVGSETPSGAIDWLLQELLKDKLRLWLSSQQKDRHDLAGCSLSKKEQGIIHMIAGLGYVWALNPILGCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQEPDGKSAASIADIHGHKGLAGYLSEVALTSHLSSLTFEESELPKGSAEVEAEMTVNCISNGNLSSAEDYIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLLLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEVESIDESEDDDIITVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLQGFREAKAELDGASNNPAALTSLADVSGMEDCATWILLLPVTLTAAVTHGGHTSESLNQWRHPILEELD 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2358294 2377213 + CePI673135_06g002210.1 Cec06g0221 204958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0221 1011 Pfam CG-1 domain 14 127 IPR005559 GO:0003677(InterPro)
Cec06g0221 1011 SUPERFAMILY Ankyrin repeat 615 706 IPR036770 -
Cec06g0221 1011 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677(InterPro)
Cec06g0221 1011 ProSiteProfiles IQ motif profile. 763 791 - -
Cec06g0221 1011 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 949 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cec06g0221 1011 Gene3D - 576 707 IPR036770 -
Cec06g0221 1011 ProSiteProfiles IQ motif profile. 843 867 - -
Cec06g0221 1011 MobiDBLite consensus disorder prediction 162 206 - -
Cec06g0221 1011 ProSiteProfiles Ankyrin repeat region circular profile. 645 671 - -
Cec06g0221 1011 FunFam Calmodulin-binding transcription activator 2 819 867 - -
Cec06g0221 1011 SMART CG_1_2 11 129 IPR005559 GO:0003677(InterPro)
Cec06g0221 1011 SMART iq_5 842 864 IPR000048 GO:0005515(InterPro)
Cec06g0221 1011 SMART iq_5 762 784 IPR000048 GO:0005515(InterPro)
Cec06g0221 1011 SMART iq_5 819 841 IPR000048 GO:0005515(InterPro)
Cec06g0221 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 765 871 IPR027417 -
Cec06g0221 1011 Gene3D Immunoglobulins 411 504 IPR013783 -
Cec06g0221 1011 SUPERFAMILY E set domains 417 500 IPR014756 -
Cec06g0221 1011 SMART ANK_2a 645 674 IPR002110 GO:0005515(InterPro)
Cec06g0221 1011 ProSiteProfiles Ankyrin repeat profile. 645 677 IPR002110 GO:0005515(InterPro)
Cec06g0221 1011 CDD IPT 417 501 - -
Cec06g0221 1011 Gene3D - 820 867 - -
Cec06g0221 1011 ProSiteProfiles IQ motif profile. 820 849 - -
Cec06g0221 1011 Pfam IQ calmodulin-binding motif 822 840 IPR000048 GO:0005515(InterPro)
Cec06g0221 1011 Pfam IQ calmodulin-binding motif 845 864 IPR000048 GO:0005515(InterPro)
Cec06g0221 1011 Pfam IPT/TIG domain 417 500 IPR002909 -
Cec06g0221 1011 Pfam Ankyrin repeats (3 copies) 618 704 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0221 K21596 - - csv:101222798 1640.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0880 Cec-Chr4:28534803 Cec06g0221 Cec-Chr6:2358294 5.50E-140 dispersed
Cec06g0221 Cec-Chr6:2358294 Cec06g0470 Cec-Chr6:5282011 1.20E-110 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1270 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00202 Cam06g0008 Cec06g0221 Cco06g0217 Clacu06g0217 Cmu06g0212 Cre06g0984 . . . . . . Chy11g01789 Cme11g02321 . Blo12g00279 . . . . . . Sed09g0385 . . . . . . Cpe17g01072 . Bhi12g02457 Tan06g1519 Cmetu11g2536 . Hepe03g1109 . . . . . . . . . Lsi09g01722 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g0900 . 9 305 CAMTA Transcription Factor Family AT2G22300 54.3 1.8e-79 294.7
Cec10g0901 . 76 212 CAMTA Transcription Factor Family AT5G64220 71.0 4.6e-52 203.8
Cec06g0221 . 6 952 CAMTA Transcription Factor Family AT1G67310 51.6 1.0e-250 863.6
Cec06g0470 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.2 3.7e-259 891.3
Cec06g0470 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.9 6.8e-193 671.4
Cec10g0901 . 76 212 CAMTA Transcription Factor Family AT5G64220 71.0 4.6e-52 203.8
Cec10g0900 . 9 305 CAMTA Transcription Factor Family AT2G22300 54.3 1.8e-79 294.7
Cec06g0221 . 6 952 CAMTA Transcription Factor Family AT1G67310 51.6 1.0e-250 863.6
Cec06g0470 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.9 6.8e-193 671.4
Cec06g0470 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.2 3.7e-259 891.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29722 PF03859 CG-1 5.60E-48 No_clan Cec TF