Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0221 ATGATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAAGTGTTCTTTATTTTACAGAATCATGAGAATTATCAGCTGACTGAGGAGGCTCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAACCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCATGTGATCACATTGTTCTTGTACACTACAGAGATATCAGTGAGGAGCGGACTAAATATATTGAAGTGAATTGTCATTCATTTGTGAGAAAATACAAGATATGGTTGACAGATTTGTTCCAACTTGAGGGAAGGTCTGGGACGGAATCGGGTTCTACTTCCAGTTCCTATTCGTCCCAAAATCTTGCTTCAGAATGTCAACAGACTTCATTGAGTCCAGGGTCTGTAGAAGTTACTTCTGACACTGGCAACCTTACTATTGGGTCAAATGGCATGGATGGGCAGTATGAAATATCCGAATTAAAAAGTTCAAACGATCGTGATGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCAGTTTTCAGTGCTCCAGCATTCAGAAAATACTGTCCATGATAATACTTGTACGTCTGAGATGCAAGATGCTAATGGAAAACATCACCATTACAATATGGCACACGAGTTTATATTCAGTGGTGAAGGAACTCAACCATGGGGTAATGCACTTGATTCTAGTAAGACAGCCATTCTTGAGTCTCAAGACAGACATTCTCTTCTATGGAATGAAAAAGAAAATCCATCATCACCTTCGACTGTTGACAATGAACAATGCAACTGGCTGTACAGCAGAGGAAAAACTTTTCCTATGCTAGGAGGCTGCACGTCTACAGAATATTCTTCACCACTAGACAATCATGATGTTAATACCAACTACAACATACCATTTCTTAAACAAGAACATGGCAATTCTTTTGAGGTTGATACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCACCAAATAGTACCGGAGCAGGGTCATGCCACCGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTTCAGAATCTCCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAACGGGGTACTTTGTTGCGAAGCACCTCCTCACCTCCCTGGGAAGGTTGCTCTCTGCATTACATCTGGCAATCAGGAACCCTGCAGTGAAGTCAGACAGTTTGAATATAAAATGAATGTTTGCACTCATTGCCAGTCACATTCGACTGGAGCTACGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAGTGCAGAAATCTGACAAGTTAGATTCTGAATTTTGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTACTAGTTGGTAGTGAAACTCCTTCTGGTGCCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCGACTCTGGCTTTCTTCTCAACAGAAAGATAGGCACGATCTAGCAGGCTGTTCCTTGTCCAAGAAAGAACAAGGCATTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCACTAAACCCAATTCTTGGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGGAGCATCAGCTGGCGCTGTAACTGATCCTAGTTCACAAGAACCAGATGGTAAAAGTGCAGCGTCTATCGCAGACATCCATGGACACAAGGGGCTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAAGTGAGCTTCCTAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACGGTAAATTGCATTTCAAATGGGAACCTCTCTTCCGCGGAGGACTATATCCCTCTAAAAAATACGTTAGCTGCAGTAAGGAATGCTGCTCAGGCAGCAGCCCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCAGAAAGAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATCGATCCAAATGACATTCAGGGGCTCTTAGCTATGTCAAAGTTGAATTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAGAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTCTTATTGCTACGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGTTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTCGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGGTTTCGTAGCGAGGTAGAATCCATTGATGAAAGTGAAGATGATGATATTATAACGGTGTTCCGCAAACAAAAGGTGGAAGGAACCATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTTGACTCTCCGGATGCTCGTCAGCAATATCATCGTATGCTTCAAGGATTTCGAGAAGCCAAGGCTGAACTTGATGGTGCCAGTAACAACCCTGCAGCATTGACTTCTCTCGCCGATGTTTCTGGAATGGAAGATTGTGCCACGTGGATTTTACTGCTACCTGTCACCCTCACAGCTGCGGTTACCCATGGCGGCCATACTTCTGAAAGCCTCAATCAATGGCGGCACCCTATACTGGAAGAGCTCGATTGA 3036 42.59 MMNAGYDINDLYREAQTRWLKPPEVFFILQNHENYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEERTKYIEVNCHSFVRKYKIWLTDLFQLEGRSGTESGSTSSSYSSQNLASECQQTSLSPGSVEVTSDTGNLTIGSNGMDGQYEISELKSSNDRDVSQALRRIEEQLSLNEDSLKDIGPFYGHEEGSNSNLIDYYEMSNEDQFSVLQHSENTVHDNTCTSEMQDANGKHHHYNMAHEFIFSGEGTQPWGNALDSSKTAILESQDRHSLLWNEKENPSSPSTVDNEQCNWLYSRGKTFPMLGGCTSTEYSSPLDNHDVNTNYNIPFLKQEHGNSFEVDTSLIVAQVQKFTIHQIVPEQGHATESTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVALCITSGNQEPCSEVRQFEYKMNVCTHCQSHSTGATKSPEELLLLVRLVQLLLSDSSVQKSDKLDSEFWSNNLKAGDDQWSSLIEALLVGSETPSGAIDWLLQELLKDKLRLWLSSQQKDRHDLAGCSLSKKEQGIIHMIAGLGYVWALNPILGCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQEPDGKSAASIADIHGHKGLAGYLSEVALTSHLSSLTFEESELPKGSAEVEAEMTVNCISNGNLSSAEDYIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLLLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEVESIDESEDDDIITVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLQGFREAKAELDGASNNPAALTSLADVSGMEDCATWILLLPVTLTAAVTHGGHTSESLNQWRHPILEELD 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2358294 2377213 + CePI673135_06g002210.1 Cec06g0221 204958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0221 1011 Pfam CG-1 domain 14 127 IPR005559 GO:0003677(InterPro)
Cec06g0221 1011 SUPERFAMILY Ankyrin repeat 615 706 IPR036770 -
Cec06g0221 1011 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677(InterPro)
Cec06g0221 1011 ProSiteProfiles IQ motif profile. 763 791 - -
Cec06g0221 1011 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 949 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cec06g0221 1011 Gene3D - 576 707 IPR036770 -
Cec06g0221 1011 ProSiteProfiles IQ motif profile. 843 867 - -
Cec06g0221 1011 MobiDBLite consensus disorder prediction 162 206 - -
Cec06g0221 1011 ProSiteProfiles Ankyrin repeat region circular profile. 645 671 - -
Cec06g0221 1011 FunFam Calmodulin-binding transcription activator 2 819 867 - -
Cec06g0221 1011 SMART CG_1_2 11 129 IPR005559 GO:0003677(InterPro)
Cec06g0221 1011 SMART iq_5 842 864 IPR000048 GO:0005515(InterPro)
Cec06g0221 1011 SMART iq_5 762 784 IPR000048 GO:0005515(InterPro)
Cec06g0221 1011 SMART iq_5 819 841 IPR000048 GO:0005515(InterPro)
Cec06g0221 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 765 871 IPR027417 -
Cec06g0221 1011 Gene3D Immunoglobulins 411 504 IPR013783 -
Cec06g0221 1011 SUPERFAMILY E set domains 417 500 IPR014756 -
Cec06g0221 1011 SMART ANK_2a 645 674 IPR002110 GO:0005515(InterPro)
Cec06g0221 1011 ProSiteProfiles Ankyrin repeat profile. 645 677 IPR002110 GO:0005515(InterPro)
Cec06g0221 1011 CDD IPT 417 501 - -
Cec06g0221 1011 Gene3D - 820 867 - -
Cec06g0221 1011 ProSiteProfiles IQ motif profile. 820 849 - -
Cec06g0221 1011 Pfam IQ calmodulin-binding motif 822 840 IPR000048 GO:0005515(InterPro)
Cec06g0221 1011 Pfam IQ calmodulin-binding motif 845 864 IPR000048 GO:0005515(InterPro)
Cec06g0221 1011 Pfam IPT/TIG domain 417 500 IPR002909 -
Cec06g0221 1011 Pfam Ankyrin repeats (3 copies) 618 704 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0880 Cec-Chr4:28534803 Cec06g0221 Cec-Chr6:2358294 5.50E-140 dispersed
Cec06g0221 Cec-Chr6:2358294 Cec06g0470 Cec-Chr6:5282011 1.20E-110 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29722 PF03859 CG-1 5.60E-48 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0221 K21596 - csv:101222798 1640.94