Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0239 ATGGATCAATTTCTTACCAAAACAAAAGAAGATCAAGAAGATCAAGAAGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGATCAAGATCAAGTTGTTGCATGCAATTTCTTCCCAAATTCTCACTCCCAATTAACTCAACAACAAGATCGAGATCAAGAAAGTGGAAATTATGAGTCTCAAAACGAAGATCAACCGATACTCATGGATTTATCCTTAAGAATGGAAAGCAGTGGCTTTGATGGTGTTGTAGAAAGAGAACACATGTTTGATAAAGTTGTTACTCCAAGTGATGTTGGCAAATTAAACCGTTTAGTCATCCCAAAACAACATGCTGAAAAATACTTCCCTTTAGACTCATCCACCAACGACAAAGGCCTCATCTTGAACTTTGAAGACCGTCATGGAAAGCCTTGGCGCTTTCGTTACTCTTATTGGAATAGTAGCCAAAGCTATGTCATGACTAAAGGTTGGAGCCGCTTTGTTAAGGAGAAAAACCTCGACGCCGGCGACATCGTTTCCTTCCACCGTGCTCTCCCGAGTCATTCCACCAACGACAACCGTCTTTTTATTGACTGGCGTCGTCGTCGCCCTGACGCTCCTACTCCTCATCACAATCACCACCACCATTTCTCCAACCCTTTTCTCTTTCGTTGGGCTACTGCTCATCACTTGCCACCACCACTGCCTCCTATGCGACGAACAACTCAACACCACCATCTTTACCCTAATTACGGGTTTGAAGTCCCTAATTTTGGGATGTCTAATAACAATAATTCTTCCATGTATTATTTTCGACCTATGTCGCCTTCTTCTTCTTCGTCTCTTTATAGGATTGGAAATGGGGATGAGATTGTTGTTAATAATCAACGATGTTCTTCTATGGGAATTGTTAACAAACCCGGCTCCGGCGCTGCGAAACGGTTGAGACTCTTTGGAGTGAATATGGAGTGTGCTTCACCGGACGGAGAAGGAGGAGGAGGAGAGGATTTGTCGAACAGCGGCGATTCGAGAAGAGGGAAAGAACCCTTGTCATTGAATTGGGATTTACTTTAA 1059 42.78 MDQFLTKTKEDQEDQEEEDEEEEEEEEEDQDQVVACNFFPNSHSQLTQQQDRDQESGNYESQNEDQPILMDLSLRMESSGFDGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKNLDAGDIVSFHRALPSHSTNDNRLFIDWRRRRPDAPTPHHNHHHHFSNPFLFRWATAHHLPPPLPPMRRTTQHHHLYPNYGFEVPNFGMSNNNNSSMYYFRPMSPSSSSSLYRIGNGDEIVVNNQRCSSMGIVNKPGSGAAKRLRLFGVNMECASPDGEGGGGEDLSNSGDSRRGKEPLSLNWDLL 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2554739 2555797 + CePI673135_06g002390.1 Cec06g0239 204976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0239 352 Coils Coil 5 32 - -
Cec06g0239 352 CDD B3_DNA 89 178 IPR003340 GO:0003677(InterPro)
Cec06g0239 352 SMART B3_2 91 198 IPR003340 GO:0003677(InterPro)
Cec06g0239 352 ProSiteProfiles B3 DNA-binding domain profile. 91 198 IPR003340 GO:0003677(InterPro)
Cec06g0239 352 MobiDBLite consensus disorder prediction 12 32 - -
Cec06g0239 352 MobiDBLite consensus disorder prediction 35 67 - -
Cec06g0239 352 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 11 317 IPR044800 GO:0003700(InterPro)
Cec06g0239 352 FunFam B3 domain-containing protein 84 209 - -
Cec06g0239 352 Pfam B3 DNA binding domain 91 197 IPR003340 GO:0003677(InterPro)
Cec06g0239 352 Gene3D - 84 212 IPR015300 -
Cec06g0239 352 SUPERFAMILY DNA-binding pseudobarrel domain 88 179 IPR015300 -
Cec06g0239 352 MobiDBLite consensus disorder prediction 1 67 - -
Cec06g0239 352 MobiDBLite consensus disorder prediction 320 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2525 Cec-Chr5:36260130 Cec06g0239 Cec-Chr6:2554739 2.30E-40 dispersed
Cec06g0239 Cec-Chr6:2554739 Cec07g0888 Cec-Chr7:21955307 9.90E-52 dispersed
Cec06g0239 Cec-Chr6:2554739 Cec01g0127 Cec-Chr1:1163092 2.00E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29725 PF02362 B3 2.00E-28 CL0405 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0239 K09287 - csv:101221141 522.702