Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0277 ATGGGGAAGAAAGGAGGTAGCTCATGGTTGACTGCCGTCAAAAGGGCTTTCAGATCTCCCACTAAAGATGATGATGAAAAGAGAAGAGAGAAACGCCGCTGGATTTTCAGAAAACCAACAAATCAGCCGCCGGAGCCACTCGCCGCCCACCAGCCGCCGTCTACGCCACCGGCTCTCTCCACTCATTCTGTAGCTTTAGAAGACCAGAAACATGCCCTTGCAGTGGCTGAAGCTGCCATGGTCGCCGCCAGAGCGGCTGCACAAGCCGTCCACCTCACCCGCCCTGCCCGTCCTGGATTGGATCGCCATCGCCTCGCCGCCATTGTGATTCAAACTGCCTTTAGAGGATATCTGGCAAGGAGGGCTCTACGGGCATTGAAGGGGTTGGTGAAGTTGCAGGCATTAGTGAGAGGACACAATGTGAGGAAGCAAGCAAAGACGACGCTGCAGTGTATGAAAGCATTAGTGAGAGTGCAGGAAAAAGTTCTCGATCACCGGATGCGACTTTCCCTCGAGGGTAGCCGACGGTCTACATTCAGCGACACCAACAGCGTGTATGAATCTCGCTATGCTCAAGACGTCTCCGAGAGGAAGACTATTTGTGTATCAAGAGAAGGAAGCAGAATTACGGAGGATTGGGATGAACGTGCTCACACAGTTGAAGAAGTAAAAGCAATGTTACAATATAGAAGAGATGCTGCTTTGAATCGTGACAACATTTTATCTCATTCCTTTTCTCAACAGATATGGAGGACTGGAAAGAGCCCATCAATAGGAAATCAAGCGGAGCTTGAAGAAGGACAAAAATGGCTCGACCAATGGATGGCGAAGAAGCCATGGGAGAATAGAGCAAGAGCTTCCACAGATAACAGACCACAGCCCCTTAAAACGCTCGAAATCGACACCTCTAGGCCCTACTCTTACTTATCTCCCAACAATCTCCACGCAACGAATTATCAAACGCAATCACAAAGATCGAACTCGCTTTCCTCATCCTCCCCACTCCACAGAGCCCATCACCATCAGTTCTCCATCACCCCGTCCCCATCAAAATCTCGACCGGTCCAGCAAGTTCGGTCGGCGAGTCCCCGCTACAGCAGAGAAGATAGAAACCAAATCAGCCACCACATTACATCCCAAACACCAAGCTTGAGGACAAAACATCAACATCACAAATGGGGTAGTGGTGGTGGGACTTCAATGCCAAATTACATGGCAGCAACAGAGTCAGCCAAGGCACGAGTCCGGTCGCAAAGTGCGCCGAGGCAAAGGCCAGCAACACCCGAGAGGGAACGAGTTGGAACTGCGAGGAAGCGGCTATCTTTTCCAGTACCACCGGATCCTTATGGTAGAATAGCAGGGTGCGGTGTTTATGGGGATAGCATGAAGAGCCCAAGTTTTAAGAGTGCTTGTGGAAGGTATGGTGGGTTGGAGGAACAGTCTAACTATTCTTCTTGCTATACAGAAAGCCATGGAGGAGAGGTTTCACCATCTTCAACCACTGACCTCAGAAGGTGGCTGAGATGA 1527 50.49 MGKKGGSSWLTAVKRAFRSPTKDDDEKRREKRRWIFRKPTNQPPEPLAAHQPPSTPPALSTHSVALEDQKHALAVAEAAMVAARAAAQAVHLTRPARPGLDRHRLAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEKVLDHRMRLSLEGSRRSTFSDTNSVYESRYAQDVSERKTICVSREGSRITEDWDERAHTVEEVKAMLQYRRDAALNRDNILSHSFSQQIWRTGKSPSIGNQAELEEGQKWLDQWMAKKPWENRARASTDNRPQPLKTLEIDTSRPYSYLSPNNLHATNYQTQSQRSNSLSSSSPLHRAHHHQFSITPSPSKSRPVQQVRSASPRYSREDRNQISHHITSQTPSLRTKHQHHKWGSGGGTSMPNYMAATESAKARVRSQSAPRQRPATPERERVGTARKRLSFPVPPDPYGRIAGCGVYGDSMKSPSFKSACGRYGGLEEQSNYSSCYTESHGGEVSPSSTTDLRRWLR 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3116200 3118522 + CePI673135_06g002770.1 Cec06g0277 205014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0277 508 SMART iq_5 102 124 IPR000048 GO:0005515(InterPro)
Cec06g0277 508 SMART iq_5 125 146 IPR000048 GO:0005515(InterPro)
Cec06g0277 508 MobiDBLite consensus disorder prediction 482 508 - -
Cec06g0277 508 MobiDBLite consensus disorder prediction 282 435 - -
Cec06g0277 508 PANTHER IQ-DOMAIN 5-RELATED 9 437 - -
Cec06g0277 508 ProSiteProfiles IQ motif profile. 103 131 - -
Cec06g0277 508 MobiDBLite consensus disorder prediction 1 61 - -
Cec06g0277 508 FunFam IQ-domain 11 102 153 - -
Cec06g0277 508 Pfam IQ calmodulin-binding motif 130 146 IPR000048 GO:0005515(InterPro)
Cec06g0277 508 Pfam IQ calmodulin-binding motif 106 124 IPR000048 GO:0005515(InterPro)
Cec06g0277 508 Gene3D - 100 157 - -
Cec06g0277 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 148 IPR027417 -
Cec06g0277 508 ProSiteProfiles IQ motif profile. 127 154 - -
Cec06g0277 508 MobiDBLite consensus disorder prediction 17 38 - -
Cec06g0277 508 MobiDBLite consensus disorder prediction 303 362 - -
Cec06g0277 508 MobiDBLite consensus disorder prediction 401 424 - -
Cec06g0277 508 Pfam Protein of unknown function (DUF4005) 362 456 IPR025064 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0021 Cec-Chr5:246665 Cec06g0277 Cec-Chr6:3116200 1.90E-117 dispersed
Cec05g0950 Cec-Chr5:8294342 Cec06g0277 Cec-Chr6:3116200 1.10E-18 dispersed
Cec06g0277 Cec-Chr6:3116200 Cec09g2145 Cec-Chr9:38401423 2.00E-29 dispersed
Cec06g0277 Cec-Chr6:3116200 Cec04g1024 Cec-Chr4:29828467 3.10E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0277 - - - 0.0