Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0360 ATGGCTTCTTTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTTTTCCTTTTCTTTTCTCTGCCATCTCTCTCCTTCTCCATCTCGAAAGATGAAGCTTCGTATCTCACTCATCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTATGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACAGCGCTTGACGACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCGGAAATTGGCCTTATCAACGATTTGGCGCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAATCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCTACCGCTAAGTTCCTTGATCTTCGGTATAATGACTTCGAAGGAGAAGTCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGACACCATCGGAAACTCAACCGTCTCTGTTGTCTCCTTTGCCAACAATGAGTTTCATGGTTGCATTCCCAGCACTATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGCAACAAGCTTGACGGCTGTTTCCCACCCGAGATTGGAAACCTCGTCAATCTTACGGTCTTCGATGCCAGCGCCAATGGTTTCATTGGCCATCTGCCCGAAACCTTATCTGGCCTCCAAAATTTGGAGATCATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCCTTTGCAAGTTGCCTAAATTGGCTAACTTCACTTTCTCCTTTAATTATTTTGATGGCGAAGATGCAACGTGTGTTGGAACTAAGGGATCAGATAAACTCTTTGATGATGCTCAAAATTGTTTGACGAATCAACCGGAGCAAAAAGATGCAAATAAATGTAGCGTTGTCTTAAAGAAATCTGTGGATTGCGGAAACTGTAGTGGTGGTGGTTCAGGTTCTCCCGGAGTGCCAATGACTCCTGCGGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCAACTCCAGTGAACTCTCCACCAGAATCGAACGACACCTCGGTCCCAGAAGTGGAGACTCCTCTTGCCCCATCATTGTCACCAACCTCTGCTCCGTTCTCACCACCTAACCTTGAAACCCCCAATCCATCCCCAGTTGACTCTCTCGAACCACCAGTTCACTCACCACCACCTCCAGTCCATTCACCACCACTACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCACTCTCCACCACCCCCTGTTCACTCCCCACCACCACCTGTCTCCTCCCCTCCACCACCAGTTCATTCTCCACCTCCTCTTGTTCACTCTCCACCTCTACCGGTCCACTCCCTACCACCACCGGTCCACTCCCCACCTCCACCAGTCCACTCCCCACCTCCACCGGTCCACTCCCCACCACCCCCACCAGTTCATTCTCCACCTCCTCCTGTTCACTCTCCACCACCACCGGTCCACTCCCCACCTCCACCGGTCCACTCCCCACCACCCCCTGTCCACTCCCCACCCCCACCAGTTTACTCCCCACCTCCACCGGTCCACTCCCCACCTCCCCCGGTCCACTCCCCACCACCCCCTGTCCACTCCCCACCCCCACCAGTTTACTCCCCACCTCCACCAGTCCACTCCCCACCCCCACCGGTCCATTCCCCACCCCCACCGGTCTACTCCCCACCGCCACCTATCCATTCTCCACCACCACCTGTTTACTCCCCACCGCCACCAGTCCAATCTCCACCACCTCCAACTGCATCTCCTCCTCCTCCTCCTCCCGATTATTCTCCACCGCCAACATTCGAGGACGTCATCCTCCCACCAAATATCGGCTTTCAATACACATCACCACCTCCACCACAGTTTCCTGGCTATTAA 2163 51.64 MASFHRKQANHACFLLLFLFFSLPSLSFSISKDEASYLTHRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDDSDMEVVAGIDLNHGDIAGYLPPEIGLINDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEVPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLDGCFPPEIGNLVNLTVFDASANGFIGHLPETLSGLQNLEIMDVSNNELRGSVPGGLCKLPKLANFTFSFNYFDGEDATCVGTKGSDKLFDDAQNCLTNQPEQKDANKCSVVLKKSVDCGNCSGGGSGSPGVPMTPADPFDQSPSPRYRSPPTPVNSPPESNDTSVPEVETPLAPSLSPTSAPFSPPNLETPNPSPVDSLEPPVHSPPPPVHSPPLPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVSSPPPPVHSPPPLVHSPPLPVHSLPPPVHSPPPPVHSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVYSPPPPIHSPPPPVYSPPPPVQSPPPPTASPPPPPPDYSPPPTFEDVILPPNIGFQYTSPPPPQFPGY 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4147492 4149654 - CePI673135_06g003600.1 Cec06g0360 205097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0360 720 Gene3D Ribonuclease Inhibitor 237 354 IPR032675 -
Cec06g0360 720 MobiDBLite consensus disorder prediction 409 430 - -
Cec06g0360 720 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Cec06g0360 720 MobiDBLite consensus disorder prediction 396 720 - -
Cec06g0360 720 SUPERFAMILY L domain-like 83 351 - -
Cec06g0360 720 MobiDBLite consensus disorder prediction 431 450 - -
Cec06g0360 720 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
Cec06g0360 720 MobiDBLite consensus disorder prediction 451 699 - -
Cec06g0360 720 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cec06g0360 720 PRINTS Proline rich extensin signature 497 514 - -
Cec06g0360 720 PRINTS Proline rich extensin signature 459 480 - -
Cec06g0360 720 PRINTS Proline rich extensin signature 480 496 - -
Cec06g0360 720 PRINTS Proline rich extensin signature 444 456 - -
Cec06g0360 720 PRINTS Proline rich extensin signature 423 439 - -
Cec06g0360 720 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 348 - -
Cec06g0360 720 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cec06g0360 720 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 526 IPR051582 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0360 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2162 Cec-Chr5:33235578 Cec06g0360 Cec-Chr6:4147492 3.50E-32 dispersed
Cec06g0360 Cec-Chr6:4147492 Cec06g0364 Cec-Chr6:4166402 6.20E-08 dispersed
Cec06g0360 Cec-Chr6:4147492 Cec06g0361 Cec-Chr6:4154996 6.20E-08 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0578 . 32 266 Leucine-rich Repeat extension Gene Families AT1G62440 62.6 5.1e-48 189.9
Cec07g0286 . 48 376 Leucine-rich Repeat extension Gene Families AT1G62440 58.7 5.0e-43 173.3
Cec11g0262 . 72 423 Leucine-rich Repeat extension Gene Families AT1G62440 61.6 1.1e-42 172.2
Cec06g1179 . 60 232 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 6.1e-41 166.4
Cec06g1179 . 33 404 Leucine-rich Repeat extension Gene Families AT4G13340 76.7 2.8e-67 253.8
Cec11g0262 . 37 423 Leucine-rich Repeat extension Gene Families AT4G13340 74.0 4.8e-67 253.1
Cec05g0578 . 18 368 Leucine-rich Repeat extension Gene Families AT4G13340 69.1 1.4e-55 214.9
Cec07g0286 . 40 377 Leucine-rich Repeat extension Gene Families AT4G13340 62.2 6.3e-43 172.9
Cec06g0361 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 63.0 1.3e-40 165.2
Cec06g0360 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.4 1.7e-40 164.9
Cec06g0364 . 22 225 Leucine-rich Repeat extension Gene Families AT4G13340 54.9 1.7e-40 164.9
Cec06g0365 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.7 1.6e-38 158.3
Cec06g1179 . 23 399 Leucine-rich Repeat extension Gene Families AT3G24480 74.3 1.1e-72 271.2
Cec11g0262 . 37 419 Leucine-rich Repeat extension Gene Families AT3G24480 73.0 7.1e-72 268.5
Cec05g0578 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 66.7 8.7e-54 208.4
Cec07g0286 . 48 398 Leucine-rich Repeat extension Gene Families AT3G24480 58.4 1.7e-44 177.6
Cec06g0361 . 25 225 Leucine-rich Repeat extension Gene Families AT3G24480 61.2 8.5e-41 165.2
Cec06g0364 . 25 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.0 8.5e-41 165.2
Cec06g0365 . 34 225 Leucine-rich Repeat extension Gene Families AT3G24480 50.8 3.0e-38 156.8
Cec05g0578 . 15 368 Leucine-rich Repeat extension Gene Families AT3G22800 71.3 1.4e-69 260.8
Cec07g0286 . 40 376 Leucine-rich Repeat extension Gene Families AT3G22800 63.9 1.5e-50 197.6
Cec06g1179 . 72 400 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 4.9e-38 156.0
Cec06g1179 . 46 404 Leucine-rich Repeat extension Gene Families AT5G25550 60.9 1.4e-39 161.0
Cec11g0262 . 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 1.2e-38 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92