Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0364 ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCATCTTCCTTTTCTTTTCACTGCCATCTCTCTCCGTCTCCATCTCAGAAGCCGAAGCTTCGTATCTCACTCGCCGTCAACTTTTGGCTCTCAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAAAAGGCTTATGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACTGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCGTTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAACCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTTGATCTCAGGTATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCGGACACCATCGGAAACTCAACCGTCTCCGTTGTCTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACTGTTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGCAACAAGCTTGGCGGTTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACAGTCTTCGATGTGAGCGCCAATGGCTTCGTGGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAGCTAACTTCACTTTCTCCTTTAATTATTTTGATGGCAAAGATGCAGCGTGTGTTGGAACTAAGGGATCAGATAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCGACCGGAGCAGAAAGATGCAAACAAATGTAGCATTGTCCTAAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTGGTTCGGGTTCTCCTGGAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTGAATCGATCGACACCTCGGTCCCAGAAGTGGGGACTCCTCCTTCTCCAAGTGAAACTTCTATTACATCATCACCACCTTCTCCAATTGAGTATTCACCACCAACCTCTGCACCACAATTGTCACCAACCTCTGCTCCATCATTATCACCAACCTCCTCTCCGATCTCACCACCTACCCTTGAAACCCCCAGTCCATCCCCAGCTGAATCTCCCGAACGACCACTTCATTCACCACCACCCCCAGTCTATTCCCCCCCACCACCAGTCTATTCACCTCCACCACCAGTTCATTCCCCACCACCTCTTGTCCACTCTCCTCCACCACCAGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCGGTCCATTCTCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCACTCCCCACCACCTCCAGTCCACTCCCCACCACCACCTGTCTCCTCTCCTCCACCACCAGTTCATTCCCCACCTCCTCCTGTCCACTCTCCACCACCACCTACCCACTCCCCACCACCACCAGTCCACTCTCCACCACCCCCCGTCCACTCACCACCACCACCCGTCCACTCCCCACCACCACCGGTCCACTCACCACCACCCCCCATCCACTCACCACCACCACCCGTCCACTCTCCACCCCCACCAGTTTACTCCTCACCCCCACCAGTTCATTCTCCACCCCCACCGGTTCACTCCCCACCCCCACCAGTCCATTCTCCACCACCGCCTGTTTACTCCCCACCGCCACCAGTCCAATCTCCACCACCTCCGACTGCATCTCCTCCTCCTCCTCCTCCCAATTCTTCTCCACCGCCATCATTCGAGGACGTCATCCTCCCGCCAAATATCGGCTTCCAATACGCATCACCACCTCCTCCACAGTTTCCTGGCTATTGA 2229 51.95 MASLHRKQANHACFLLIFLFFSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIVPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTVGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDVSANGFVGQLPETLSGLQNLEIMDVSNNELRGSVPGGFCKLPKLANFTFSFNYFDGKDAACVGTKGSDKLFDDAQNCLANRPEQKDANKCSIVLKKSVDCGNCGGGGSGSPGVPMTPEDPFDQSPSPRYRSPPPPVTSPPESIDTSVPEVGTPPSPSETSITSSPPSPIEYSPPTSAPQLSPTSAPSLSPTSSPISPPTLETPSPSPAESPERPLHSPPPPVYSPPPPVYSPPPPVHSPPPLVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVSSPPPPVHSPPPPVHSPPPPTHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVHSPPPPVYSSPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVQSPPPPTASPPPPPPNSSPPPSFEDVILPPNIGFQYASPPPPQFPGY 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4166402 4168630 + CePI673135_06g003640.1 Cec06g0364 205101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0364 742 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 739 IPR051582 -
Cec06g0364 742 SUPERFAMILY L domain-like 83 347 - -
Cec06g0364 742 Pfam Leucine rich repeat 286 343 IPR001611 GO:0005515(InterPro)
Cec06g0364 742 MobiDBLite consensus disorder prediction 433 457 - -
Cec06g0364 742 FunFam Leucine-rich repeat receptor protein kinase EMS1 237 326 - -
Cec06g0364 742 Gene3D Ribonuclease Inhibitor 73 243 IPR032675 -
Cec06g0364 742 MobiDBLite consensus disorder prediction 482 721 - -
Cec06g0364 742 MobiDBLite consensus disorder prediction 467 481 - -
Cec06g0364 742 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cec06g0364 742 MobiDBLite consensus disorder prediction 397 742 - -
Cec06g0364 742 MobiDBLite consensus disorder prediction 409 432 - -
Cec06g0364 742 Gene3D Ribonuclease Inhibitor 244 383 IPR032675 -
Cec06g0364 742 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0364 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0360 Cec-Chr6:4147492 Cec06g0364 Cec-Chr6:4166402 6.20E-08 dispersed
Cec06g0361 Cec-Chr6:4154996 Cec06g0364 Cec-Chr6:4166402 5.90E-09 dispersed
Cec06g0362 Cec-Chr6:4158936 Cec06g0364 Cec-Chr6:4166402 3.40E-32 dispersed
Cec06g0364 Cec-Chr6:4166402 Cec06g1179 Cec-Chr6:23995130 2.80E-40 dispersed
Cec06g0363 Cec-Chr6:4159538 Cec06g0364 Cec-Chr6:4166402 1.90E-06 tandem
Cec06g0364 Cec-Chr6:4166402 Cec06g0365 Cec-Chr6:4170135 7.50E-09 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0578 . 32 266 Leucine-rich Repeat extension Gene Families AT1G62440 62.6 5.1e-48 189.9
Cec07g0286 . 48 376 Leucine-rich Repeat extension Gene Families AT1G62440 58.7 5.0e-43 173.3
Cec11g0262 . 72 423 Leucine-rich Repeat extension Gene Families AT1G62440 61.6 1.1e-42 172.2
Cec06g1179 . 60 232 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 6.1e-41 166.4
Cec06g1179 . 33 404 Leucine-rich Repeat extension Gene Families AT4G13340 76.7 2.8e-67 253.8
Cec11g0262 . 37 423 Leucine-rich Repeat extension Gene Families AT4G13340 74.0 4.8e-67 253.1
Cec05g0578 . 18 368 Leucine-rich Repeat extension Gene Families AT4G13340 69.1 1.4e-55 214.9
Cec07g0286 . 40 377 Leucine-rich Repeat extension Gene Families AT4G13340 62.2 6.3e-43 172.9
Cec06g0361 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 63.0 1.3e-40 165.2
Cec06g0360 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.4 1.7e-40 164.9
Cec06g0364 . 22 225 Leucine-rich Repeat extension Gene Families AT4G13340 54.9 1.7e-40 164.9
Cec06g0365 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.7 1.6e-38 158.3
Cec06g1179 . 23 399 Leucine-rich Repeat extension Gene Families AT3G24480 74.3 1.1e-72 271.2
Cec11g0262 . 37 419 Leucine-rich Repeat extension Gene Families AT3G24480 73.0 7.1e-72 268.5
Cec05g0578 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 66.7 8.7e-54 208.4
Cec07g0286 . 48 398 Leucine-rich Repeat extension Gene Families AT3G24480 58.4 1.7e-44 177.6
Cec06g0361 . 25 225 Leucine-rich Repeat extension Gene Families AT3G24480 61.2 8.5e-41 165.2
Cec06g0364 . 25 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.0 8.5e-41 165.2
Cec06g0365 . 34 225 Leucine-rich Repeat extension Gene Families AT3G24480 50.8 3.0e-38 156.8
Cec05g0578 . 15 368 Leucine-rich Repeat extension Gene Families AT3G22800 71.3 1.4e-69 260.8
Cec07g0286 . 40 376 Leucine-rich Repeat extension Gene Families AT3G22800 63.9 1.5e-50 197.6
Cec06g1179 . 72 400 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 4.9e-38 156.0
Cec06g1179 . 46 404 Leucine-rich Repeat extension Gene Families AT5G25550 60.9 1.4e-39 161.0
Cec11g0262 . 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 1.2e-38 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92