Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0394 ATGGATCGAAGGGATCCGATGGCTTTATCGGGGTCGCAATCTTTCTATATGCAGAGGGGAATTAGCAACTCTGGCTCTGGAGCACAGGGTTTGCGTTCCTCTACTAACCCAAATGTGGCATTTCAGACCAACACTGGAGGAAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACCCTGCCATTTCACCTTATGGTGGCAATGTGGGGGCTCAATCTGGTGGAGTAGTTGCCAGTGAGCCTGTGAAACGCAAGCGAGGTCGGCCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTGTCTCCCTCCCCTTCTGCTGTAAATCCAGCCACTGTAGCTTCTTCCCCAAAGCGGGGAAGGGGACGGCCTCCCGGCTCTGGAAAGAAGCAACAAATGGCTTCTCTTTGTGAAACACTTTCTGGGTCAGCTGGCATGGGTTTTACTCCACATGTTATCACCATTGGAATAGGAGAAGATGTTGGTGCCAAGATTATGTCATTTTCACAGCAGGGACCAAGAGTTGTATGCATCTTGTCAGCAAATGGTGCTGTCTCCACTGTTACTCTTCGTCAGCCTTCGACTTCGGGAGGCACAGTCACATATGAGGGGCGTTTCGAGATAATATGTCTGTCGGGCTCTTATGCTCTTGGAGAAGTTGCTGGTTCTAGGAACCGCACTGGTGGTCTGAGTGTCTCCCTTGCTAGCCCTGATGGGCGTGTTATTGGTGGTGGAGTAGGAGGAGCGCTTATCGCAGCAACCCCGGTTCAGGTGATAGTAGGGAGTTTCATGTGGGGCAGTTCGAAGTCAAAGTACAAGAAGAGGGAAGCTGTTGAAGGCGTGATCGACTCGGATCATCATTCAGTAGATCATGCAGTTGCAATCGCAAACGTGCAGCAGAATCAGAATCTGACTCCAACGTCCTCAGTTAGCATGTGGCCATCCTCGCAGTCTCTGGACATGCGCAATGCTCACATTGACATCGATCTGATGCGCGGTTGA 1005 51.04 MDRRDPMALSGSQSFYMQRGISNSGSGAQGLRSSTNPNVAFQTNTGGNNVGSGLPMDPNPAISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPATVASSPKRGRGRPPGSGKKQQMASLCETLSGSAGMGFTPHVITIGIGEDVGAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGEVAGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKREAVEGVIDSDHHSVDHAVAIANVQQNQNLTPTSSVSMWPSSQSLDMRNAHIDIDLMRG 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4428535 4431796 + CePI673135_06g003940.1 Cec06g0394 205131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0394 334 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677(InterPro)
Cec06g0394 334 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677(InterPro)
Cec06g0394 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Cec06g0394 334 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
Cec06g0394 334 Gene3D - 151 285 - -
Cec06g0394 334 CDD DUF296 150 264 IPR005175 -
Cec06g0394 334 SMART AT_hook_2 83 95 IPR017956 GO:0003677(InterPro)
Cec06g0394 334 SMART AT_hook_2 119 131 IPR017956 GO:0003677(InterPro)
Cec06g0394 334 MobiDBLite consensus disorder prediction 11 52 - -
Cec06g0394 334 FunFam AT-hook motif nuclear-localized protein 1-like 151 281 - -
Cec06g0394 334 MobiDBLite consensus disorder prediction 98 114 - -
Cec06g0394 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 317 IPR039605 GO:0003680(InterPro)
Cec06g0394 334 MobiDBLite consensus disorder prediction 1 135 - -
Cec06g0394 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0394 Cec-Chr6:4428535 Cec08g0955 Cec-Chr8:21395096 1.50E-62 dispersed
Cec11g1942 Cec-Chr11:33528232 Cec06g0394 Cec-Chr6:4428535 2.00E-52 transposed
Cec01g0271 Cec-Chr1:2730179 Cec06g0394 Cec-Chr6:4428535 7.30E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0394 - - - 0.0