Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0422 ATGCGACTGGGAAAGTACGAGCTTGGAAAGACTCTGGGGCATGGCAATTTTGGGAAGGTCAAATTTGCTATTAATTTCGAAACTCACCAACCCTTTGCTGTCAAAGAAGTTGATAAGACCAAGATTATCCATCTTAATATCACCCATCAGTTTAAAAGGGAAATACAAACTCTCAAACTTCTCAAGCATCCAAATATAGTGAGGCTACATGAGGTTTTGGCTAGTAAAAGCAAAATTTACATGGTTCTCGAGTACGTTAACGGCGAAGAATTATTTGATACAATCGCATCAAAGGGGAAGCTATCAGAAGCTCAAGGCAGAAAAATCTTCCAACAATTACTTGATGGTGTGAGTTACTGCCATAGGAAAGGCGTTTACCATAGAGATCTCAAGTTGGAGAACATACTTGTTGATGCCATGGGAAATGTTAAGATAACTGACTTTGGCTTAAGTGCTTTACCTGAGCATTTTAGGGACGATGGTTTGCTTCACACTACCTGTGGAAGCCCAAATTACGTAGCACCAGAAATTCTTGCTAACAGAGGGTATGATGGTGCTGCCTCAGATATTTGGTCTTGTGGTGTTATCCTGTTTGTAATTCTTACAGGATCTCTTCCTTTCGATGATAGAAATCTGTCTGTTCTTTATCATAAGATTTTGAAAGGAGAAATTCAGCTACCAAAGTGGTTGTCACAAGGAGCCCAAAATTTGATAAGAAGGATTCTTGATCCCAACCCTATTTCTAGAATAACTATGGCATCCATCAAAATGGATGATTGGTTTAGAACAGACTATTATCCAGCCTACCTTGATGATGAAGAAGAAGATATATACACTAGTGAAGCTATGGCCTTCCCAATGCATCAAGTGAGTTCAGAGTCTTCCACTACTATAAATGCTTTTCAACTGATTGGAATGTCCTCATGCTTGGACCTTTCAGGTTTCTTTGAGAAAGAGGACATTTCTGAGAGGAAGATTAGATTTACAACCAATCACTCTACAAAAGAAGATATCCTCAACCGGATGGATGAACTTGTAACCAATATGGGGTTTCTTGTCCAAAAGAAACAAGGAAGGTTGAAAGTAATGAGAGAGGAAAAGGGTGAGAATGGTGTGTCCACCATACTTTCCGTATCGGCAGAGGTTTTTGAGATAAGTCCATCACTATACGTTGTAGAATTAAGAAAGTTGCATGGAGATTCATCTTCATATAGACAGTTGTGTAATATATTATCTAGTGATTTGGGTGTCCCCTCCAACCAAGACTCGGTGATGGCATAG 1281 39.34 MRLGKYELGKTLGHGNFGKVKFAINFETHQPFAVKEVDKTKIIHLNITHQFKREIQTLKLLKHPNIVRLHEVLASKSKIYMVLEYVNGEELFDTIASKGKLSEAQGRKIFQQLLDGVSYCHRKGVYHRDLKLENILVDAMGNVKITDFGLSALPEHFRDDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILFVILTGSLPFDDRNLSVLYHKILKGEIQLPKWLSQGAQNLIRRILDPNPISRITMASIKMDDWFRTDYYPAYLDDEEEDIYTSEAMAFPMHQVSSESSTTINAFQLIGMSSCLDLSGFFEKEDISERKIRFTTNHSTKEDILNRMDELVTNMGFLVQKKQGRLKVMREEKGENGVSTILSVSAEVFEISPSLYVVELRKLHGDSSSYRQLCNILSSDLGVPSNQDSVMA 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4751714 4761484 + CePI673135_06g004220.1 Cec06g0422 205159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0422 426 Pfam NAF domain 296 355 IPR004041 GO:0007165(InterPro)
Cec06g0422 426 Gene3D Transferase(Phosphotransferase) domain 1 86 283 - -
Cec06g0422 426 FunFam Non-specific serine/threonine protein kinase 1 85 - -
Cec06g0422 426 Gene3D Kinase associated domain 1, KA1 292 417 - -
Cec06g0422 426 FunFam Non-specific serine/threonine protein kinase 295 418 - -
Cec06g0422 426 FunFam Non-specific serine/threonine protein kinase 1 300 - -
Cec06g0422 426 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Cec06g0422 426 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g0422 426 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Cec06g0422 426 SUPERFAMILY Protein kinase-like (PK-like) 3 298 IPR011009 -
Cec06g0422 426 CDD CIPK_C 299 415 - -
Cec06g0422 426 ProSiteProfiles NAF domain profile. 293 317 IPR018451 GO:0007165(InterPro)
Cec06g0422 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g0422 426 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g0422 426 SMART serkin_6 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g0422 426 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 405 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0422 Cec-Chr6:4751714 Cec06g1412 Cec-Chr6:27645482 1.40E-103 dispersed
Cec06g0422 Cec-Chr6:4751714 Cec06g0423 Cec-Chr6:4770123 6.00E-144 tandem
Cec05g0819 Cec-Chr5:6899384 Cec06g0422 Cec-Chr6:4751714 6.90E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72064 PF00069 Pkinase 7.30E-72 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0422 K07198 - csv:101206030 723.391