Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0424 ATGGCTCCTGATCTAAACACGACACTTTCCAAGAAGACGTTTGTTTTTGGTATGAAGGTATGGGTGTTTACTGGGATCCTGGTTGGGGTGTTTATTGTAATAGTCCTTGTAGTGCTATCAATATGTGTTACTTCACGAAGAAAATCTAGAAGGGTAAGTGGCATGCTTCCTCTCAACCGTATTTCCGTTGCATCAAAGGAAATCAAGGAGATTGGAGTGGATCATGTTACACCAATCCAACAGGGTTCCCTCCCCCACGATGGATTCGACACAGAATCAGAAAAAGTTCTTCTATATTCAAACAAGGCATACAATTACAGCATATCAGGCTCAGTTGATCACACAGAGATATATGCTATTGGCTCTGGAGAAGGGAGCAAGGAAGCAAGCGTTTTGCAAAGAACCTCAGATTCAATACCACCGAATCCTTCGCCACTGGCTGGTCTGCCAGAATTCTCACAACTGGGATGGGGTCACTGGTTCACCTTAAGAGACCTGGAACTTGCAACAATGCATTTTTCAAACGATAATATAATTGGGGAGGGAGGATATGGAGTTGTTTATCGAGGTCATCTTATCAATGGGACACCTGTAGCTGTCAAAAAGCTTTTAAGTTTAGGACAAGCAGAAAGGGAATTCAGAGTGGAAGTAGAAGCGTTTGGGCATGTGCGGCATAAGAACTTAGTACGGCTCCTGGGATACTGCATTGAAGGAACGCACAGGATACTAGTATATGAGTACGTGGATAATGGAAATCTAGAGCAGTGGCTTCACGGAGCTCTATGTCAGCATGGATATCTCACTTGGGAAGCAAGAGTCAAAATTCTCCTTGGTACTGCTAAGGCACTGGCATATTTGCATGAGGCAATCGAGCCAAAAATCGTCCATCGAGATATCAAGGCAAGCAACATATTGATTGATGATGAGTTTAATGCAAAGCTATCAGACTTTGGGCTGGCCAAATTACTCGGTGCTGGGAAGAGCCACATTACCACCAGAGTTATGGGTACGTTTGGATATGTGGCACCAGAATATGCCAAATCTGGCCTTCTAAATGAGAAAAGCGATGTTTATAGTTTTGGAGTAGTACTTTTGGAAGCAATTACTGGAAGAGACCCTGTTGATTATGGTCGCCCAACACATGAGGTAAATTTGGTGGATTGGCTAAAGATGATGGTAGGCAGCAAACGGTCAGAAGAGGTGGTAGATCCAAATATAGAGAGAAAGCCATCAATTAGTGAACTGAAGCGAGTTCTTTTGACTGCTTTGAGGTGTGTGGATCCAGATGCTGATAAGAGGCCTAAGATGAGCCAAGTTTCCCGCATGCTCGAGTCTGAAGAATATCCAATTCCTCGACAGGACCGGAGACCCAGAAAAAGCAATGCCATTGCGACCAAAATGGAGACTGAGAAACAGGAAAGAGGACCCAGACGACACAGATAA 1443 44.01 MAPDLNTTLSKKTFVFGMKVWVFTGILVGVFIVIVLVVLSICVTSRRKSRRVSGMLPLNRISVASKEIKEIGVDHVTPIQQGSLPHDGFDTESEKVLLYSNKAYNYSISGSVDHTEIYAIGSGEGSKEASVLQRTSDSIPPNPSPLAGLPEFSQLGWGHWFTLRDLELATMHFSNDNIIGEGGYGVVYRGHLINGTPVAVKKLLSLGQAEREFRVEVEAFGHVRHKNLVRLLGYCIEGTHRILVYEYVDNGNLEQWLHGALCQHGYLTWEARVKILLGTAKALAYLHEAIEPKIVHRDIKASNILIDDEFNAKLSDFGLAKLLGAGKSHITTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPTHEVNLVDWLKMMVGSKRSEEVVDPNIERKPSISELKRVLLTALRCVDPDADKRPKMSQVSRMLESEEYPIPRQDRRPRKSNAIATKMETEKQERGPRRHR 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4794683 4797436 + CePI673135_06g004240.1 Cec06g0424 205161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0424 480 Gene3D Transferase(Phosphotransferase) domain 1 248 457 - -
Cec06g0424 480 Gene3D Phosphorylase Kinase; domain 1 154 247 - -
Cec06g0424 480 Pfam Protein kinase domain 175 440 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g0424 480 CDD STKc_IRAK 179 444 - -
Cec06g0424 480 FunFam serine/threonine-protein kinase PBS1-like 150 247 - -
Cec06g0424 480 MobiDBLite consensus disorder prediction 447 480 - -
Cec06g0424 480 SUPERFAMILY Protein kinase-like (PK-like) 157 454 IPR011009 -
Cec06g0424 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g0424 480 FunFam Putative receptor-like serine/threonine-protein kinase 248 459 - -
Cec06g0424 480 MobiDBLite consensus disorder prediction 430 480 - -
Cec06g0424 480 SMART serkin_6 173 443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g0424 480 ProSiteProfiles Protein kinase domain profile. 173 449 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g0424 480 ProSitePatterns Protein kinases ATP-binding region signature. 179 202 IPR017441 GO:0005524(InterPro)
Cec06g0424 480 PANTHER OS01G0323000 PROTEIN 1 470 IPR052232 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1927 Cec-Chr2:37128872 Cec06g0424 Cec-Chr6:4794683 5.30E-146 dispersed
Cec06g0424 Cec-Chr6:4794683 Cec09g2350 Cec-Chr9:40323737 1.10E-154 dispersed
Cec10g1189 Cec-Chr10:25952497 Cec06g0424 Cec-Chr6:4794683 3.30E-58 wgd
Cec02g1552 Cec-Chr2:33137914 Cec06g0424 Cec-Chr6:4794683 1.70E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72066 PF00069 Pkinase 4.20E-48 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0424 - - - 0.0