Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0425 ATGGCTTCCTTCTCCTTCTCCTTCTCCTCGCTCCTTCCTTCTTCAGTTTCTTTCGATCATGGCTCCCCTTCCTTTTTTCCCATCTTTGTTTCATCTTCTTCACACTCCAATTCTCGCATTGTTCGTTGTGCATTTGCAGCCCCCACTAGAAAATTCCCTCCTCCTCCTCCTTCTACTTCTTCTTCATTACCTGCTAAGAAGAAGCACTGGAAGCAAGGGGAATTTCCAGGAATTACAGAGACATCCGCCCCCAGGAAGACCCCTCTCAAGAATGTCAAAAAGAAATTAGACCGCAAGAACAATGCCAAGGCTTGGGCCAACACCGTCACTGAAGCCTTGTCCGACCATATCACGAATAAACGGTGGCTTCAAGCTCTTGAGGTGTTTGAAATGCTCCGCGAACAGCCGTTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGCTTGTTCTACTTGGGAGATCTGGCCAACCACATCGTGCCCGTCTGCTTTTCGACACAATGGTTGAAGAAAGATGTGAACCTACCTCTGAACTTTACACTGCTTTGCTTGCTGCGTATTGTCGGAACAATCTCATTGATGATGCATTCTCCACTCTTAATCTCATGAAGACCCTCCCTGGTTGCCAACCTGATGTCTACACTTATAGTACCTTAATCAAGGCTTGTGTCGATGCTTCTCGCTTTGATATGGTCGAATCATTGTATGAGGAAATGGCCGAACGACTGATAACTCCAAATACAGTGACTCAGAACATAGTCTTAAGTGGATACGGCAAGATAGGGAAGTATGACCAAATGGAGAAAGTTCTTTTAGGAATGCTTGAGAGCACAACTTGTAGACCGGATGTGTGGACAATGAATATAATTCTTAGCGTGTTTGGTAATAAGGGACAGATTGAAATGATGGAAAAATGGTATGAGAAGTTTCGTAACTTTGGTATCGAGCCAGAAACACGTACATTTAATATTTTGATTGGTGCTTATGGGAAGAAAAGGATGTATGATAAAATGTCTTCTGTGATGGAGTATATGCGCAAACTGCAGTTTCCTTGGACGACATCAACGTACAACAACGTGATTGAAGCTTTCGCTGATGTGGGAGATGCAAAGAACATGGAGTACACGTTTGAGCAGATGCGTGCTGAGGGCATGAGAGCAGATACCAAGACGTTCTGTTGCCTTATAAACGGATATGCAAATGCAGGTCTCTTCCATAAGGTAATTAGCTCAGTTAAGTTGGCAGGAAAATTCGAGATTCCAGAAAATACCTCATTTTATAATGCAGTTATATCTGCATGTGCTAAGGCTGAGGATCTGATGGAAATGGATAGAGTATTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATAGCAAAACATATTCTATTATGATGGAAGCATATGGAAAGGAAGGCATGAATGATAGAGTTCATTACTTGGTGCTGGAAAAGAAACAGAGCTTTTGTGACAATGAAGCTGATCAGTATTTAGTGTCTCCCAATTCTAGTTATATTAGTCTTAGGCGAACTTGCTTTTTGTTCTGGACAAATTGGCGTGCAGTGAGAAAACGTACGAGACTCTCAAGTCCGCACACGGTGGCCACCTGTCCTTGTACACCCATGCGAGCTATGTTAAAGGTATTTGCTTACAAGGGCACAGTATTCTAG 1671 42.73 MASFSFSFSSLLPSSVSFDHGSPSFFPIFVSSSSHSNSRIVRCAFAAPTRKFPPPPPSTSSSLPAKKKHWKQGEFPGITETSAPRKTPLKNVKKKLDRKNNAKAWANTVTEALSDHITNKRWLQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMVEERCEPTSELYTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDASRFDMVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKFEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMMEAYGKEGMNDRVHYLVLEKKQSFCDNEADQYLVSPNSSYISLRRTCFLFWTNWRAVRKRTRLSSPHTVATCPCTPMRAMLKVFAYKGTVF 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4802677 4804941 + CePI673135_06g004250.1 Cec06g0425 205162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0425 556 PANTHER EXPRESSED PROTEIN 61 482 IPR044179 GO:0003729(InterPro)
Cec06g0425 556 Pfam PPR repeat family 423 470 IPR002885 -
Cec06g0425 556 Pfam PPR repeat family 282 330 IPR002885 -
Cec06g0425 556 Pfam PPR repeat family 354 401 IPR002885 -
Cec06g0425 556 Pfam PPR repeat family 176 224 IPR002885 -
Cec06g0425 556 Pfam PPR repeat 252 276 IPR002885 -
Cec06g0425 556 Pfam PPR repeat 144 173 IPR002885 -
Cec06g0425 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Cec06g0425 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Cec06g0425 556 Gene3D Tetratricopeptide repeat domain 354 413 IPR011990 GO:0005515(InterPro)
Cec06g0425 556 Gene3D Tetratricopeptide repeat domain 83 206 IPR011990 GO:0005515(InterPro)
Cec06g0425 556 Gene3D Tetratricopeptide repeat domain 276 353 IPR011990 GO:0005515(InterPro)
Cec06g0425 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Cec06g0425 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Cec06g0425 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 282 IPR002885 -
Cec06g0425 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Cec06g0425 556 Gene3D Tetratricopeptide repeat domain 414 488 IPR011990 GO:0005515(InterPro)
Cec06g0425 556 Gene3D Tetratricopeptide repeat domain 207 275 IPR011990 GO:0005515(InterPro)
Cec06g0425 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Cec06g0425 556 MobiDBLite consensus disorder prediction 51 86 - -
Cec06g0425 556 NCBIfam pentatricopeptide repeat 356 388 IPR002885 -
Cec06g0425 556 NCBIfam pentatricopeptide repeat 249 283 IPR002885 -
Cec06g0425 556 NCBIfam pentatricopeptide repeat 179 213 IPR002885 -
Cec06g0425 556 NCBIfam pentatricopeptide repeat 427 459 IPR002885 -
Cec06g0425 556 NCBIfam pentatricopeptide repeat 214 247 IPR002885 -
Cec06g0425 556 NCBIfam pentatricopeptide repeat 144 176 IPR002885 -
Cec06g0425 556 NCBIfam pentatricopeptide repeat 286 317 IPR002885 -
Cec06g0425 556 NCBIfam pentatricopeptide repeat 321 349 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0425 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0425 Cec-Chr6:4802677 Cec09g0884 Cec-Chr9:8334861 8.10E-48 dispersed
Cec06g0425 Cec-Chr6:4802677 Cec06g1732 Cec-Chr6:30837828 1.60E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g249 . Blo12g00376 Bda03g00833 . Bpe04g00789 . Bma04g00732 . . . . . . . . . . . . . . . . . Cla06g00396 Cam06g0417 Cec06g0425 Cco06g0425 Clacu06g0404 Cmu06g0404 Cre06g1183 Cone14ag0683 Cone15ag0695 . . . . . . . . . . . . . . Sed09g0597 . . . . . . Cpe12g00347 . Bhi12g01993 Tan06g2812 Cmetu11g0485 Lac11g1038 Hepe03g0014 . Lcy12g0899 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008423 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 2 1 35