Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0436 ATGGTGAAGGTACGGATGAACACCGCCGATGTCGCCGCCGAGGTGAAATGCCTCAGAAGATTGATAGGCATGCGATGCGCCAATGTCTATGATCTCTCGCCCAAGACATACATGTTCAAGCTTATGAACAGTAGTGGAGTTACTGAATCAGGTGAGAGTGAGAAGGTGTTGCTGTTGATGGAAAGTGGAGTCAGATTGCATACGACTGAATATGTTCGAGACAAAAGCAATACTCCATCTGGGTTCACTCTCAAACTAAGAAAGCATATACGCACAAGAAGACTTGAGGATGTGCGGCAACTTGGATACGATAGGATAATCCTATTTCAGTTTGGGCTAGGTGCTAGTGCACACTATGTTATCCTGGAGCTGTATGCCCAGGGGAATATCATTCTTACGGATTCTGAATTTATGGTCTTAACTCTTCTTCGATCACACAGGGACGATAATAAGGGGGTAGCAATTATGTCACGGCATCGATATCCAACTGAAATTTCTCGAGTGTTTGAGAGGACGACAGCTGCAAAATTGCAGGAAGCACTCACTCTAAGTGACAATGTAGTTAATCTTACAGGGAATGCAAATAATGAAACAGATCCTCCAAAGCAGCAGCCAGGTAACCAAAAAGTGTCAAAGCCTTCTGTCTCAAGTAAAGCCCAAGGTGATGGCAGTCGAGCCAAACAGACTACTTTGAAAGCTGTTCTTGGGGAGGCAATGGGATATGGAACTGCACTATCTGAGCACATTATATTAAATGCCGGTCTGATTCCAAATATGAAACTCTGTAATGATAATAAACTTGATGATAATAATCTTCAGCTCTTAGTGCAAGCTGTTGCAAATTTTGAGGATTGGCTAGAGGATGTAATATTTGGTACTAGAGTTCCTGAAGGTTACATTTTGATGCAGAAGAAAGATGTTAAAAAAGAAGAATCTGAGGCGGCAACTGCTAGCGAGATCTATGATGAGTTCTGCCCAATTTTATTAAACCAATTCATGTCTAGAAAGTATACAAAGTTTGAGACATTTGATGCAGCTTTGGATGAATTCTACAGTAAAATTGAGAGTCAAAGGTCAGAACAGCAACAAAAGGCCAAGGAGAGCTCTGCAACTCAGAAACTTAATAAAATACGTATGGATCAGGGAAATCGTGTAGAGTTATTAAAACAAGAAGTTGACCATTCTGTCAAAATGGCAGAATTAATTGAATACAATTTAGAAGATGTAGATGCTGTTATATTAGCTGTCCGTGTTGCTCTTGCTAAAGGCATGAGCTGGGAGGATCTTGCACGAATGGTGAAAGAAGAAAAGAAATCTGGAAATCCAGTGGCGGGTCTTATTGACAAACTTAATCTTGAAAGGAATTGCATGACTTTGCTGCTGAGCAACAATCTTGATGAAATGGATGACGATGAAAAAACACAACCAGTTGATAAGGTAGAGGTGGATATATCACTTTCAGCTCATGCCAATGCTCGGCGATGGTATGAACTTAAGAAAAAACAAGAGAGCAAACAGGAGAAAACGATCACTGCACATGAAAAAGCTTTTAAAGCTGCTGAAAGAAAAACTCGTCTTCAACTTTCCCAGGAAAAAACAGTTGCCACGATATCCCATATGCGCAAAGTTCATTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAATTATTTGGTTATCAGTGGCCGTGATGCTCAACAAAATGAGATGATAGTCAAACGTTACATGTCAAAGGGAGATCTGTATGTCCATGCTGATTTGCACGGAGCTTCTAGCACTGTGATTAAGAATCACAAGCCCGAACAACTAGTGCCTCCGCTCACGCTGAACCAAGCAGGATGTTTTACGGTTTGTCACAGCCAGGCATGGGATTCAAAGATAGTCACTAGTGCCTGGTGGGTTTATCCTCACCAGGTTAGTAAAACTGCTCCCACAGGGGAATATCTTACAGTTGGGAGTTTTATGATTCGAGGAAAGAAGAATTTTCTTCCTCCACATCCTCTTATCATGGGTTTTGGATTGTTATTTCGCTTGGATGAGAGCTCCTTAGGTTCACATTTAAATGAAAGGAGGGTAAGAGGTGAGGAGGATGGAGTGAATGACGTTGAAGAAAATGAGCCTCTTGATGAAGAATCTGATACTGAATATGAGAAGAGGGAATCAGAAGAGGTATCCAATACATCTGCAAATTCATATAGACCAGTTATATCTGGACTTGAAGGCACAGAATCACTTGAAACTCCCATTGAAGGTAGAATGACATTGAACGGTGTCAATAAGGATATCCAACCTGATGTTAGAGATAACGTTTCCCTTGTCACACCACAACTTGAAGATCTCATTGATAAAGCTCTTGAGCTTGGTTCTGCTACTGCATCTAGCAAAAATTATATATTGGAGACTTCTAAGGTTGATTTGGTCGATGAACCCCATCAACATGACAAGAATGCTGCAGGGAGAGAGAAACCCTACATCTCAAAAGCTGAAAGAAGGAAACTTAAGAAAGGTCAGAATAGCAGTTTTACAGACAGCAGCATTAAGCAGGAAAGTGAACAATCAAAAGATGTTGATGTTTCTTTGAATCATCCTCAAAACAAGGTTAATAATCCAAAGTCGGGTTCTGTGAAAATCAGCCGTGGTCAGAGGGGTAAACTCAAGAAAATGAAAGAAAAGTATGCTGATCAAGATGAAGAAGAAAGAAGCATCCGCATGGCTTTATTGGCTTCCTCAGGCAAGGTACCGAAAAATGAAGGTGCACAAAATGTGAAGGAAACAACTTCTGAAGTGAAGAAACCTGATGGAGGTGTTGAAGAAGCTCCAAAGATATGCTATAAATGTAAGAAGCCGGGTCATTTGTCTCGTGATTGCCCAGAACATCCTGATAATCTTTCACATAATCACTCAAATGGTGCAACTCAAGACGATCGCCAAGTGGTCATGGATAATGATACTGAATTGGACAAAATAACTATGGAAGAGGATGATATTCATGAAATAGGTGAAGAGGAGCGAGAAAAACTGAATGACGTCGATTACTTGACCGGAAATCCTTTGCCTACGGACATTCTTTTGTATGCTGTGCCGGTCTGTGGTCCGTACAATGCAGTGCAATCTTACAAATACCATGTCAAGATTGTTCCAGGCTCTCTAAAGAAAGGGAAAGGTGCAAAAACTGCCTTGAACCTGTTCACGCACATGCCTGAAGCGACAATAAGAGAGAAAGAACTGATTAAGGCATGCACAGACCCAGAGCTCGTCGCGGCCATCATTGGGAATGCTCGGCAAGCAAGGAAGCTAGCTGTTGCTACTATTGTCTTGAGCCGGAATACAAAACTCGCCGGAGCAGAAGGTGGAGAGGCGGAGATGAGCTCATCGGCGCATCAACCTTGTGGGTTGAACTCGAGGTATTCGTATCCTCCTCTTTCTTCACCGCGATTTTCGGCTTCGAGTTGGAACTGGAACCGCTTTTCTCCAAACCAACGGCGTAAAGTGCTTCCATTAGTTTCAGCTGCAGCTTCTTCCCCTTCTCCCATTTCCAATGCGCAGACCAAAGAGCGCCTTAAACTCAAGCAACTCTTCAAGGAAGCTTATGAACGCTGCTGTACTGCCCCCATGGATGGCATCTCCTTCACTCTTGAAGACTTCCATGCCGCTCTTGCAAATTACGACTTTGTTACTGAACTCGGAACCAAGGTTAAGGGTACTGTATTCTGTACCGATGCTAATGGGGCACTAGTTGATACTACTGCAAAGGGAACTGCATACTTGCCCACTCAAGAGGCATGCATTCTTAAAATAAGACATGTAGAAGAAGCAGGCATATATCCTGGTTTAGAAGAGGAGTTCGTAATTATTGCTGAACAGGAAGATGGCGATGGCTTAATTCTGAGCTTGAAAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTCCAAGCTGAGGATATTGTTATCAAGGGTAAGGTTGTTGGTGCAACCAAAGGGGGATTAGTTGTTCTTGTGGAAGGTCTTAGAGGCTTTGTTCCTTTCTCTCAGATATCAGCAAAATCAACTGGAGAGGAGCTTCTTAATAAAGAGCTACGTCTGAAGTTTGTGGAGGTTGATGAGAAACTATCTCGGCTAGTCTTAAGTAATTCCAAGGCCATTGTCAGTAGTCAGGCAGAGCTAAGAATTGGTTCAGTAGTTACTGGAACCGTGCAGTTTCTGAAACCATATGGAGCCTTTATTGACATCGGAGGAATTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGCAACCGTTCTTCAACCAGGAGATATGCTTAAGGTCATGATTTTGAGCTATGACTGCAACAAAGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTACTCCTGGAGACATGATTCACAATCCAAAGCTTGTCTTTGAGAAGGCGGACGAGATGGCTCAGATATTCAGGCAAAGAATAGCTCAAGCAGAAACAATGGCTCGTGCAGGCCTTCTCGGATTTCAGCTTGAGAATTTATAG 4542 42.27 MVKVRMNTADVAAEVKCLRRLIGMRCANVYDLSPKTYMFKLMNSSGVTESGESEKVLLLMESGVRLHTTEYVRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGASAHYVILELYAQGNIILTDSEFMVLTLLRSHRDDNKGVAIMSRHRYPTEISRVFERTTAAKLQEALTLSDNVVNLTGNANNETDPPKQQPGNQKVSKPSVSSKAQGDGSRAKQTTLKAVLGEAMGYGTALSEHIILNAGLIPNMKLCNDNKLDDNNLQLLVQAVANFEDWLEDVIFGTRVPEGYILMQKKDVKKEESEAATASEIYDEFCPILLNQFMSRKYTKFETFDAALDEFYSKIESQRSEQQQKAKESSATQKLNKIRMDQGNRVELLKQEVDHSVKMAELIEYNLEDVDAVILAVRVALAKGMSWEDLARMVKEEKKSGNPVAGLIDKLNLERNCMTLLLSNNLDEMDDDEKTQPVDKVEVDISLSAHANARRWYELKKKQESKQEKTITAHEKAFKAAERKTRLQLSQEKTVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHADLHGASSTVIKNHKPEQLVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEDGVNDVEENEPLDEESDTEYEKRESEEVSNTSANSYRPVISGLEGTESLETPIEGRMTLNGVNKDIQPDVRDNVSLVTPQLEDLIDKALELGSATASSKNYILETSKVDLVDEPHQHDKNAAGREKPYISKAERRKLKKGQNSSFTDSSIKQESEQSKDVDVSLNHPQNKVNNPKSGSVKISRGQRGKLKKMKEKYADQDEEERSIRMALLASSGKVPKNEGAQNVKETTSEVKKPDGGVEEAPKICYKCKKPGHLSRDCPEHPDNLSHNHSNGATQDDRQVVMDNDTELDKITMEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKGAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARQARKLAVATIVLSRNTKLAGAEGGEAEMSSSAHQPCGLNSRYSYPPLSSPRFSASSWNWNRFSPNQRRKVLPLVSAAASSPSPISNAQTKERLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYLPTQEACILKIRHVEEAGIYPGLEEEFVIIAEQEDGDGLILSLKSVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQIFRQRIAQAETMARAGLLGFQLENL 1513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4909081 4925671 - CePI673135_06g004360.1 Cec06g0436 205173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0436 1513 Gene3D - 1308 1388 IPR012340 -
Cec06g0436 1513 SUPERFAMILY Nucleic acid-binding proteins 1228 1326 IPR012340 -
Cec06g0436 1513 FunFam RNA-binding transcriptional accessory protein 1379 1467 - -
Cec06g0436 1513 SMART S1_6 1316 1382 IPR003029 GO:0003676(InterPro)
Cec06g0436 1513 SMART S1_6 1393 1463 IPR003029 GO:0003676(InterPro)
Cec06g0436 1513 SMART S1_6 1228 1300 IPR003029 GO:0003676(InterPro)
Cec06g0436 1513 MobiDBLite consensus disorder prediction 190 227 - -
Cec06g0436 1513 CDD S1_RPS1_repeat_hs4 1395 1463 - -
Cec06g0436 1513 Pfam Zinc knuckle 943 959 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec06g0436 1513 ProSiteProfiles Zinc finger CCHC-type profile. 944 959 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec06g0436 1513 Pfam NFACT protein C-terminal domain 1005 1091 IPR021846 -
Cec06g0436 1513 Pfam NFACT N-terminal and middle domains 21 161 - -
Cec06g0436 1513 Pfam NFACT N-terminal and middle domains 200 521 - -
Cec06g0436 1513 Gene3D - 938 983 - -
Cec06g0436 1513 Pfam S1 RNA binding domain 1317 1380 IPR003029 GO:0003676(InterPro)
Cec06g0436 1513 Pfam S1 RNA binding domain 1392 1463 IPR003029 GO:0003676(InterPro)
Cec06g0436 1513 SUPERFAMILY Retrovirus zinc finger-like domains 931 965 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec06g0436 1513 Gene3D - 1393 1466 IPR012340 -
Cec06g0436 1513 SMART c2hcfinal6 943 959 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec06g0436 1513 SUPERFAMILY Nucleic acid-binding proteins 1318 1384 IPR012340 -
Cec06g0436 1513 ProSiteProfiles S1 domain profile. 1318 1382 IPR003029 GO:0003676(InterPro)
Cec06g0436 1513 MobiDBLite consensus disorder prediction 809 900 - -
Cec06g0436 1513 ProSiteProfiles S1 domain profile. 1230 1300 IPR003029 GO:0003676(InterPro)
Cec06g0436 1513 SUPERFAMILY Nucleic acid-binding proteins 1388 1469 IPR012340 -
Cec06g0436 1513 FunFam nuclear export mediator factor Nemf 6 163 - -
Cec06g0436 1513 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Cec06g0436 1513 ProSiteProfiles S1 domain profile. 1395 1463 IPR003029 GO:0003676(InterPro)
Cec06g0436 1513 MobiDBLite consensus disorder prediction 858 877 - -
Cec06g0436 1513 Pfam NFACT protein RNA binding domain 548 659 IPR008532 -
Cec06g0436 1513 MobiDBLite consensus disorder prediction 690 746 - -
Cec06g0436 1513 MobiDBLite consensus disorder prediction 809 838 - -
Cec06g0436 1513 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 1 1095 IPR051608 GO:0000049(PANTHER)|GO:0043023(PANTHER)|GO:0072344(PANTHER)|GO:1990112(PANTHER)|GO:1990116(PANTHER)
Cec06g0436 1513 MobiDBLite consensus disorder prediction 915 936 - -
Cec06g0436 1513 CDD S1_RPS1_repeat_ec2_hs2 1318 1380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0436 K24971 - - csv:101208866 1989.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0797 Cec-Chr5:6689786 Cec06g0436 Cec-Chr6:4909081 1.10E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g26 Blo01g00045 . . Bda08g00319 . . . Bma05g01011 . Cmo17g00377 . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . Chy11g01596 . . . . . Bpe05g00809 . . . . . . . Cma17g00388 . Car17g00358 Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01512 . . Cme11g02101
Vvi5g199 Blo01g00045 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g212 . . . . . . . Bma05g01011 . . . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . . . . . . . Bpe05g00809 . . . . . . . . . . Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01511 . . Cme11g02101
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009988 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 3 33