Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0445 ATGAAAAACAATAGAAAAGATGGGCGGGCCACTAGCCCGTGCGACAAGGCATATGATAAGGAAAGGATACTATCATTAACACATGCGCACACAAATCAAGCAACTACCCATTTCGAGACCTACGTGTCTATGCGCCGAGAACGGGATGGGCTGCTGAAACAGCCCAATGGGACTCACTGTCCTCAAGAGGACTGCACAAATTTGGGTATTCGATTTCTCACTTCCGCAAAGCTGGAGAGGCACAGAGGAGACCGCTATGGCCCCGACCAAGATTCCCACCCTTATCGTCACTCTGCAGCTCCTTCTCGCTTCTCGGACTCGCCCGTGAACCATCACGACACTCGCCGGAGCCCCAGTAACTTCCGCGGCGGCGTTGCTGGAGCTAACCGTCGCCCTTTCGACAGCCCGCCTCGCTACTCTACTCCCGCTGCTGCTGGTTTTCGCCCCATGGGAACTGGTGGGGGGTTCCGTCCAATTCCTGGTCCTGGGGGTGGTGGTTTTGGGTCCAGTTTCCAGCCGCCACCTGTTGCAGGACAGAAACGAGGTTACCCTTTTACCGGCCGTGGAAGTTCTCCAGATCACTCCGATGGAAGCAATTTTGCCAAGCTATTTGTTGGATCCGTTCCAAGGACAGCCACAGAAGAGATTATTCGCCCGTTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGCCAGCAACAAGGATGTTGTTTTGTAAAATATACTACCTCAGAAGAAGCTGATAGAGCAATTAGGAACTTGCACAATCAACATACCCTTCCTGGGGGAGCGGGCCCAATTCAAGTTAGATATGCTGATGGAGAGCGAGAGCGCCTTGGTGCAGTTGAGTACAAATTGTTTGTTGGTTCACTAAATAAACAAGCTTCAGAAAAAGAAGTCAAGGAAATTTTTTCTCCCTATGGGGTAGTTGAAGATGTTTACCTTATGCGGGATGAAATGAAACAGAGTCGTGGGTGTGGATTTGTGAAGTATTCACATAGGGATATGGCACTGGCGGCTATAAATGCTCTCAATGGAATCTTTACAATGAGAGGCTGTGATCAACCGTTAAGTGTCCGCTTTGCTGACCCAAAGAAGCCTAGATCTGGAGATTCAAGGGGCACTCCTGCATTTGGAGGTCCAGGTTTTGGATCTCGCTTTCAAGCACCTGGGCCAAGACCAATGCCTAATTTTGGTGAATTTATGGGTGATCGAATTCCAATTGATGTACGAGGTTTCAGGCCACCTGTAGATGCTGGTATTCATCCCTTTGGGGGTCAGTTACCTCCTAGGTCGAGTGAAATGGGACCACCTTTGAATTTGGGTGGTCCTGCTAGTGGGTTTAGAGGTCCCAATCAAGGGTTAGTCAATCCAGCATCCTCAGCTTCTCAACAGTCTGCAAGCCAACATCCACCGCATGGCTTGCAAGCGTCGCCAGTGCTAAAGGCAGTTCAGTCACCGAAACAATTGCCACCTTCCAGTCAATTGCACCCTCATGCTCCTTCCTATTCTCAGACACATACATCTGCAGTACTAGCACAGCAGCATAATCAACCACAAAACTTAAATTCTTCTGGTCAATTGCCCTTTAGTCAACCTGCACCTTCCCATGAGTCTTCTGGCTTGGGTGCACAGTTGCCGCTATCTCAGGCTATGGTCCAGCAGGGTGCCTCATCTGCTGCAGCGACACATACTCCTTTGAGCATGAACTTACAATCCCATGCAGCTGCTCCTAATCAACAGCAGCTTCCTACTCCAATTCAGCCACGTCAGAATTCACCTTCCCAGTTAGCACACATGCTGTCACAACAAAAACAAACTCTACAGGCTACTTTTCAGACATCCCAGCAGGCATTCTCTCAGCTACAGCAGCTGATACAACCATCAAATCAAAGTTCAACATTGCAGCCGAGTTCCCAGACCATTAAGCAGCAGTCTCACTGGGCAGGGGCTGTGCCACATACAACTGCCAATGCCGCTTCTGCACCTTCAGATGAACATACATCTACAGTTCCTCCTGTAGCTATAAATACCCAAGCTGTAGCTCCTGTAAAATGCAATTGGACAGAGCACACTTCTCCTGATGGTTATAAATACTATTATAACAGTGTTACCGGTGAGAGCAAGTGGGAGAGACCTGAAGAACTTTCAGTGATTGAGCAACAACAAAAGCCACCGGTACTCCAGCCTCATAACCAGCCACATCCTCAACTACTATCTACTCCGCAACTCTCTCAAACTCCCCAGCCCCAGTTTCAAACTCAGTTCCAGACACAGATGCCCCACCCTCAGCCGCTACAGCAACCTTCATTCCATTCACAGGAAGGTGCTTATACACAATTGCAGCCAGCCAATAGCTCAGTAAATGATCCTACTCGCTTCCACCAGGGATTTCAGGCGACTCAAGAGTGGGCATGGAAGAATAAATAA 2454 48.74 MKNNRKDGRATSPCDKAYDKERILSLTHAHTNQATTHFETYVSMRRERDGLLKQPNGTHCPQEDCTNLGIRFLTSAKLERHRGDRYGPDQDSHPYRHSAAPSRFSDSPVNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPAAAGFRPMGTGGGFRPIPGPGGGGFGSSFQPPPVAGQKRGYPFTGRGSSPDHSDGSNFAKLFVGSVPRTATEEIIRPLFEEHGNVIEVALIKDKRTGQQQGCCFVKYTTSEEADRAIRNLHNQHTLPGGAGPIQVRYADGERERLGAVEYKLFVGSLNKQASEKEVKEIFSPYGVVEDVYLMRDEMKQSRGCGFVKYSHRDMALAAINALNGIFTMRGCDQPLSVRFADPKKPRSGDSRGTPAFGGPGFGSRFQAPGPRPMPNFGEFMGDRIPIDVRGFRPPVDAGIHPFGGQLPPRSSEMGPPLNLGGPASGFRGPNQGLVNPASSASQQSASQHPPHGLQASPVLKAVQSPKQLPPSSQLHPHAPSYSQTHTSAVLAQQHNQPQNLNSSGQLPFSQPAPSHESSGLGAQLPLSQAMVQQGASSAAATHTPLSMNLQSHAAAPNQQQLPTPIQPRQNSPSQLAHMLSQQKQTLQATFQTSQQAFSQLQQLIQPSNQSSTLQPSSQTIKQQSHWAGAVPHTTANAASAPSDEHTSTVPPVAINTQAVAPVKCNWTEHTSPDGYKYYYNSVTGESKWERPEELSVIEQQQKPPVLQPHNQPHPQLLSTPQLSQTPQPQFQTQFQTQMPHPQPLQQPSFHSQEGAYTQLQPANSSVNDPTRFHQGFQATQEWAWKNK 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5016733 5031138 + CePI673135_06g004450.1 Cec06g0445 205182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0445 817 Gene3D - 288 379 IPR012677 -
Cec06g0445 817 ProSiteProfiles WW/rsp5/WWP domain profile. 690 723 IPR001202 GO:0005515(InterPro)
Cec06g0445 817 MobiDBLite consensus disorder prediction 734 817 - -
Cec06g0445 817 MobiDBLite consensus disorder prediction 637 657 - -
Cec06g0445 817 MobiDBLite consensus disorder prediction 370 402 - -
Cec06g0445 817 Pfam RNA recognition motif 294 358 IPR000504 GO:0003723(InterPro)
Cec06g0445 817 Pfam RNA recognition motif 203 265 IPR000504 GO:0003723(InterPro)
Cec06g0445 817 Gene3D - 189 287 IPR012677 -
Cec06g0445 817 FunFam Flowering time control protein FCA 288 378 - -
Cec06g0445 817 MobiDBLite consensus disorder prediction 495 612 - -
Cec06g0445 817 SUPERFAMILY RNA-binding domain, RBD 184 286 IPR035979 GO:0003676(InterPro)
Cec06g0445 817 MobiDBLite consensus disorder prediction 81 198 - -
Cec06g0445 817 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 372 IPR000504 GO:0003723(InterPro)
Cec06g0445 817 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 282 IPR000504 GO:0003723(InterPro)
Cec06g0445 817 CDD WW 693 723 IPR001202 GO:0005515(InterPro)
Cec06g0445 817 MobiDBLite consensus disorder prediction 461 481 - -
Cec06g0445 817 SUPERFAMILY WW domain 687 723 IPR036020 GO:0005515(InterPro)
Cec06g0445 817 SMART rrm1_1 293 368 IPR000504 GO:0003723(InterPro)
Cec06g0445 817 SMART rrm1_1 202 278 IPR000504 GO:0003723(InterPro)
Cec06g0445 817 SUPERFAMILY RNA-binding domain, RBD 292 397 IPR035979 GO:0003676(InterPro)
Cec06g0445 817 SMART ww_5 691 723 IPR001202 GO:0005515(InterPro)
Cec06g0445 817 FunFam flowering time control protein FCA isoform X2 195 287 - -
Cec06g0445 817 MobiDBLite consensus disorder prediction 426 612 - -
Cec06g0445 817 PANTHER TRANSFORMER-2-RELATED 291 384 - -
Cec06g0445 817 Pfam WW domain 694 721 IPR001202 GO:0005515(InterPro)
Cec06g0445 817 Gene3D - 692 734 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0445 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0353 Cec-Chr5:2899343 Cec06g0445 Cec-Chr6:5016733 9.10E-13 dispersed
Cec06g0445 Cec-Chr6:5016733 Cec01g0408 Cec-Chr1:4287223 5.50E-13 dispersed
Cec09g0624 Cec-Chr9:5439388 Cec06g0445 Cec-Chr6:5016733 8.50E-41 transposed
Cec10g1168 Cec-Chr10:25507130 Cec06g0445 Cec-Chr6:5016733 2.10E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37