Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0456 ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCCGATTCCAACTCCGACCACCAAATCCACCACCACCATCATCACCATCAACGTTCTCAATCCATTTCACCTCAGCGTTCTAGATTTGCTACGGCTCGGAGAAGAGGTGGCGCTGCTGGAGGTTTAGACGCCGCCGCCGCCGCCTGGAAAAGGGGCTCTTCATCATTTCGACATTCTTCTCCACTTCAGAGAGAAAGTAGGACTCGTGACCCTTTGAATGCCGCCGCCGCCGGAGGTGGCGGCGGCGGCGGCGGCGGCTCTGGCCCCGCCGCTGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGCCTGTTTATATTTTTGACCTTAATTATCATATAATTTACTGGAATCGAGCTGCTGAAATTGTATATGGGTATTCTGCGGCGGAGGCTCTTGGCCAGGACGCCATTGAGCTTCTAGTAGATCCTGAGGATTTCGCGATTGCAAACCATGTAATTCTTCGTGTCATGGCGGGTGAGAATTGGACTGGTCACTTACCTGTAAAGAACAAGATGGGGCAAAAATTTATAGTTGTTGCCGCCAACACTCCATTCTACGACGATGGTGCATTGGTTGGGATTATCTGTGTATCGAGCGATTTGCGGCCATTTCAAGATTTGAAGATTCCTCTATCAGTAGGTTCTAAACAGCAGGATGCAGATTCGAGCATGGTAATCCCAGTTTCAGCTAAGCTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATTGCTTCAAAGTTATCCAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTTGAAAATTCGAACTGGAGAAAACAGTTCGGATCGTGAAGGTGGAAGTGGAGATAGTTATCACTCTGATCTTGGCTATCCAGAGGCAGTTCTTTGTGACCATCGGGACGATGCAAATTCGAGCGGAGCTAGCACACCTCGAGGAGATTCCACGGCTCATGGTGCATTCTCTCAGGTTGAAGAGAAGTTATCTGGCAAACTGGTCAGGGATTCTGGTGATGAGGTTAAAGGAAAACCTACCATCCAGAAGATCTTATCCTCAAAGGCAGAAGAATGGATTGCCAAGAAAGGCTTATCCTGGCCTTGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAACAAAGGCAGCCCGTTTTGTTTGGCCTTGGTTACAAATTGATCAAGAAGCCGAACCAGCTAATCAAAAGAGTTCCTCTATTTCTGGGAAACCAGAAATGCAGCAAAACGACAGTCATCGAGCAGTCAATAACGAGGCCTCAGGATCGTGGTCGTCGTTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAAGTTGACACAGATATAGACTGTTTGGATCATGAAATCTTGTGGGAAGACCTTACCATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCACTGTGGTATGGATCAGACGTTGCCGTCAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAAACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGTCTCTGCATTGTCACAGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCTCGAGGCATGAACTATCTTCACCATTGCAATCCACCTATTATTCACCGAGATTTGAAATCATCGAACCTCTTAATCGATAAAAACTGGACTGTGAAGGTTGGAGATTTTGGTCTATCTCGGCTTAAGCATGAGACTTATCTAACAACTAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCTGAAGTTCTTCGTAATGAGCCCTCGGATGAGAAGTCCGACATATACAGTTTTGGAGTCATATTGTGGGAGCTTGCAACTGAGAAGATCCCTTGGGAAAATCTCAATTCGATGCAGGTAATTGGTGCTGTTGGGTTCATGAACCAACGTCTTGAAATCCCCAAGGATGTGGATCCACAATGGGCTTCTATTATTGAGAGCTGCTGGCAAAGCGAACCTTCAAACCGGCCATCATTCCAAGTTCTGATAGAAAAGCTTAGAGAAATGCAGAGGAAGTTTGCTATGCAATTACAGGCAGCTCGTTCTGGTGGAGAGAATAATAATAATAATAATAATAATAATAACAACAACATCCCTCAAAAGGAAACATAA 2385 46.08 MGTPPAEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNSDHQIHHHHHHHQRSQSISPQRSRFATARRRGGAAGGLDAAAAAWKRGSSSFRHSSPLQRESRTRDPLNAAAAGGGGGGGGGSGPAAVNFTNKQYLNILQSMGQPVYIFDLNYHIIYWNRAAEIVYGYSAAEALGQDAIELLVDPEDFAIANHVILRVMAGENWTGHLPVKNKMGQKFIVVAANTPFYDDGALVGIICVSSDLRPFQDLKIPLSVGSKQQDADSSMVIPVSAKLGLDPQQPLQVAIASKLSNLASKVSNKVKLKIRTGENSSDREGGSGDSYHSDLGYPEAVLCDHRDDANSSGASTPRGDSTAHGAFSQVEEKLSGKLVRDSGDEVKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGGSETKAARFVWPWLQIDQEAEPANQKSSSISGKPEMQQNDSHRAVNNEASGSWSSFNVNSTSSVSSCGSTSSSAVNKVDTDIDCLDHEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFKQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWQSEPSNRPSFQVLIEKLREMQRKFAMQLQAARSGGENNNNNNNNNNNNIPQKET 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5147762 5152366 - CePI673135_06g004560.1 Cec06g0456 205193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0456 794 MobiDBLite consensus disorder prediction 431 461 - -
Cec06g0456 794 CDD PAS 142 243 IPR000014 -
Cec06g0456 794 PANTHER SERINE-THREONINE PROTEIN KINASE 71 760 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cec06g0456 794 Pfam Protein tyrosine and serine/threonine kinase 505 757 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g0456 794 Pfam PAS fold 134 242 IPR013767 GO:0006355(InterPro)
Cec06g0456 794 SUPERFAMILY PYP-like sensor domain (PAS domain) 135 242 IPR035965 -
Cec06g0456 794 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g0456 794 FunFam PAS domain-containing protein tyrosine kinase family protein 583 774 - -
Cec06g0456 794 MobiDBLite consensus disorder prediction 88 124 - -
Cec06g0456 794 SMART serkin_6 505 765 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g0456 794 MobiDBLite consensus disorder prediction 35 72 - -
Cec06g0456 794 NCBIfam PAS domain S-box protein 133 243 IPR000014 -
Cec06g0456 794 FunFam PAS domain-containing protein tyrosine kinase 498 582 - -
Cec06g0456 794 MobiDBLite consensus disorder prediction 365 379 - -
Cec06g0456 794 SUPERFAMILY Protein kinase-like (PK-like) 488 755 IPR011009 -
Cec06g0456 794 SMART pas_2 133 200 IPR000014 -
Cec06g0456 794 Gene3D PAS domain 143 245 - -
Cec06g0456 794 Coils Coil 6 26 - -
Cec06g0456 794 MobiDBLite consensus disorder prediction 340 354 - -
Cec06g0456 794 Gene3D Transferase(Phosphotransferase) domain 1 583 794 - -
Cec06g0456 794 ProSiteProfiles PAS repeat profile. 131 202 IPR000014 -
Cec06g0456 794 MobiDBLite consensus disorder prediction 769 794 - -
Cec06g0456 794 PRINTS Tyrosine kinase catalytic domain signature 728 750 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g0456 794 PRINTS Tyrosine kinase catalytic domain signature 579 592 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g0456 794 PRINTS Tyrosine kinase catalytic domain signature 618 636 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g0456 794 PRINTS Tyrosine kinase catalytic domain signature 665 675 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g0456 794 PRINTS Tyrosine kinase catalytic domain signature 684 706 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g0456 794 MobiDBLite consensus disorder prediction 771 794 - -
Cec06g0456 794 Gene3D Phosphorylase Kinase; domain 1 498 582 - -
Cec06g0456 794 ProSiteProfiles Protein kinase domain profile. 505 765 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g0456 794 MobiDBLite consensus disorder prediction 336 380 - -
Cec06g0456 794 CDD STKc_MAP3K-like 511 757 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0456 Cec-Chr6:5147762 Cec10g1954 Cec-Chr10:34337981 1.10E-90 dispersed
Cec06g0456 Cec-Chr6:5147762 Cec01g1612 Cec-Chr1:30762998 9.00E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72068 PF07714 PK_Tyr_Ser-Thr 3.70E-69 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0456 - - - 0.0