Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0481 ATGGATCTGAGCCACATGAAAGGATCGATGCCGATGCCGATGCCGACGCCGACTTCAATTTCTGCTAGAAAATCCACAGATATGGTTTCTGATCAGTTCCCGGCCGGTCTTCGCGTCCTGGTTGTTGACGACGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCCGTGACGAAATGCAACCGGGCGGAGATTGCGTTATCCATGCTTCGTGAGAACAAAAATGGTTATGATATTGTTTTAAGCGATGTGCATATGCCTGACATGGATGGATTCAAGCTTCTAGAGCAAGTTGGGCTGGAGATGGATTTGCCTGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGTGATTACCTGATCAAACCCGTTCGGATAGAAGCACTCAGGAACATATGGCAACATGTAGTTCGAAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCCAGTAGCGTGGACGATGGAGATCGAGAGCAAAATCTGTCTGAAGGTGCAAATTATTCGTCTTCGGCATACGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCTGAAGAAGAGCCCGAGGAGAGGGACGATACATCGACGTTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAACAGTTTGTCGCTGCAGTTAATCAGCTAGGCATTGACAAGGCTGTCCCTAAGAAGATATTGGAGTTGATGAATGTTCCGGGGCTTACTAGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCACCACATCAAAGTAATTTGAACAATTCTTTTATCAACCCCCAAGACCCACCTTATGGGTCAATGGCCTCATTCAATGGGATTGATCTTCAAACGCTTTCTGTCACCGGCCAACTCTCGCCACAAAGTCTTGCTGCCCTCCAAGCAACGGGACTTCATAGGCCAACCGCAAAATCTAGCATATCCATGGCTCTTGTTGATCAGAACAACATATTCAGTTTTGAAAACCCAAAATTGAGGTTTGTTGAGGACCAAACACAGCACCTAAATAACAGTAAACCAGTAAATTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCATCTTGCCAATATGCAGCATCCTTCTGTGCAGTCTCAGGGGAACATAAATATGCAACTCAATATCAAGAGCGAACATGGTGGAACTCAATTAATGCATTTGTCTCAACACCAAACTGCGGGACAGACTCTAAGTAACTCTCCTGCTAGCCACTTAAGGAAGCCGATCGTATCAGGTAACGTTACGAGGGGAAATGGGACTGCTGATAATAGCCACAGATCTGGATACAACCTAGTTTCGCCAACATCGGTGATGGTGAACTATCCAATGAGCCAAACCACGGAATTGTCCAACAATTTTTCTCTTCAGAGTAATTCATCGGTATCTACCTTGACTTGTAAAGGGGTATTTCAAGAAGAGATTAGTTCAGATCTAAAAGTATCGGGCGGACTAATGTTGAGTTATGATGTTTTTAGTGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAAAACGTAAGCACCTTGGCCTTTGGTAATTCTCACCATGGGAACTTCATACAGGATAGCTTTGATATCCCACCCTCCACTTTAATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAACCAAAATTCGTCAGTCATTGGAAAGACTATCTTTTCCTTTTCGGATTCAACTCAACCCGAAAATCCTCAAAGTATCGCCCAAAACTCGCTTCTTGATCCCGTGGAGGTCAAAACTCAGAGAATCCCAGATGCAAGCTATCAAACTGACCTCTTATCTGAGGACTTTGGCCAGGATGAACTTCTTGGCGTCTTTCTCAAACAACAGCAACAAGGAGACAACGGATCGGTCGGATTAGATGACAGAGATTTCAATGCAAGTCTAAAGCAATCTTCCTCAGAATGCTCACACAGAAGATGCAAATCTTACTCCAACTTCGATTGGCGTTCAAAGCCTGAAGCGATTTATTTTAGGATGCGTGTGAAACTGTTTGTTTGTAATGGGCACATCGCTGGATTGTCGATGCAAGGCTCGGCTCGGCTCAGCTCCATTGTATTTGGAACCAGTTAG 2184 44.28 MDLSHMKGSMPMPMPTPTSISARKSTDMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGYDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSSSVDDGDREQNLSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPHQSNLNNSFINPQDPPYGSMASFNGIDLQTLSVTGQLSPQSLAALQATGLHRPTAKSSISMALVDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKHLANMQHPSVQSQGNINMQLNIKSEHGGTQLMHLSQHQTAGQTLSNSPASHLRKPIVSGNVTRGNGTADNSHRSGYNLVSPTSVMVNYPMSQTTELSNNFSLQSNSSVSTLTCKGVFQEEISSDLKVSGGLMLSYDVFSDLHLQKSHDWDSQNVSTLAFGNSHHGNFIQDSFDIPPSTLIHHGFPSSQTNGQNQNSSVIGKTIFSFSDSTQPENPQSIAQNSLLDPVEVKTQRIPDASYQTDLLSEDFGQDELLGVFLKQQQQGDNGSVGLDDRDFNASLKQSSSECSHRRCKSYSNFDWRSKPEAIYFRMRVKLFVCNGHIAGLSMQGSARLSSIVFGTS 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5418126 5422345 - CePI673135_06g004810.1 Cec06g0481 205218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0481 727 Pfam Response regulator receiver domain 39 147 IPR001789 GO:0000160(InterPro)
Cec06g0481 727 ProSiteProfiles Response regulatory domain profile. 38 153 IPR001789 GO:0000160(InterPro)
Cec06g0481 727 MobiDBLite consensus disorder prediction 178 193 - -
Cec06g0481 727 MobiDBLite consensus disorder prediction 194 214 - -
Cec06g0481 727 Pfam Myb-like DNA-binding domain 219 269 IPR001005 -
Cec06g0481 727 SUPERFAMILY CheY-like 36 160 IPR011006 -
Cec06g0481 727 SUPERFAMILY Homeodomain-like 214 274 IPR009057 -
Cec06g0481 727 FunFam Two-component response regulator 37 174 - -
Cec06g0481 727 Gene3D - 214 276 - -
Cec06g0481 727 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 273 IPR017930 -
Cec06g0481 727 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 293 IPR045279 GO:0009736(InterPro)
Cec06g0481 727 FunFam Two-component response regulator 213 276 - -
Cec06g0481 727 PIRSF RR_ARR_type-B 19 676 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cec06g0481 727 MobiDBLite consensus disorder prediction 160 177 - -
Cec06g0481 727 Gene3D - 37 172 - -
Cec06g0481 727 NCBIfam myb-like DNA-binding domain, SHAQKYF class 217 270 IPR006447 GO:0003677(InterPro)
Cec06g0481 727 MobiDBLite consensus disorder prediction 160 214 - -
Cec06g0481 727 SMART REC_2 37 149 IPR001789 GO:0000160(InterPro)
Cec06g0481 727 CDD REC_typeB_ARR-like 39 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0939 Cec-Chr5:8188811 Cec06g0481 Cec-Chr6:5418126 2.70E-37 dispersed
Cec06g0012 Cec-Chr6:166354 Cec06g0481 Cec-Chr6:5418126 9.40E-32 dispersed
Cec06g0073 Cec-Chr6:705763 Cec06g0481 Cec-Chr6:5418126 9.60E-41 dispersed
Cec06g0481 Cec-Chr6:5418126 Cec06g1400 Cec-Chr6:27465332 7.20E-81 dispersed
Cec09g0535 Cec-Chr9:4604092 Cec06g0481 Cec-Chr6:5418126 3.00E-17 transposed
Cec05g0752 Cec-Chr5:6209066 Cec06g0481 Cec-Chr6:5418126 2.70E-212 wgd
Cec06g0481 Cec-Chr6:5418126 Cec09g0534 Cec-Chr9:4593510 5.10E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29745 PF00072 Response_reg 6.90E-22 CL0304 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0481 K14491 - csv:101210138 1196.42