Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0488 ATGGCTCCGAAGAGCCAACAGAACACTAAACCCAAAAAGAGAAAGCAAATTTCTGGCAACAAGGGTTCCTCTCATGGCTCCATTTCAAAGAAATCGAAATTTGTCAATGATAAGCCCTCGAAGTCCCCCAGCCTGGGGACTGTTGGTAGACCCTTCAAACCGCCCAAACAGAAAGAAAATCAGCATTTCAAATCAAAGGTTGAAAAGTCAGAAGCTCAAAAGGAGAATTCGGTGCCAACTACAAATCGAGATCGTCGAGTCCAAGCTAAGGAACTTGCAGAGGCTAGGAAGAAGAAAAGGAAACGACATTATGATTTGGAACATGAGCTTGCACGTCTGTGGGAGGAAATGAGGAAGCGCGATATCACTAAAGAAGATAGATCCAAATTGATAAGTAAAGCATTAGAAAACATGAAGGGGAAGATCCCTGAAATTGCAGGTTCCCATGTATCATCTCGTGTTCTTCAGACTTGTGTTAAACACTGCACAGATGCCGAGAGAGAAGCAGTGTTTGAGGAACTTAAGCCTCATTTTCTCACTCTTGCATGTAACACTTATGCAGTTCATCTAGTGAAGAAAATGTTAGATAACGCCTCGAAAAAGCAGCTGACAGTGTTTGTCTCCTCTCTACGTGGCCACGTAGCTTCTCTTCTTCGTCACATGGTTGGATCTATAGTTGTTGAACATGCATACCATTTAGCAAATGCAGCACAGAAACAAACTCTTCTACATGAGCTCTATTCGTTGGAACTTCAGCTATTTAAGGATTTGGTCTCAATGAAAGAAAGCAGGTTAGTAGATATAATTTCAAAATTGGACATTCAGAAAGCTTCAGTCTCACGACACATGACATCTGTTATCCAACCAATTTTGGAAAAAGGAATAGTTGACCACTCTATCATACATAGGGTGCTGGTGGAATACTTTACCGTAGCTGATAAGACATCTGCCGCATATGTAATCCAACAGTTGTCCAGTTCACTTCTTGTTAGAATGATTCACACTAGAGATGGATCGAGGATTGGTATACTTTGCATAAAACATGGCAGTGCAAAGGAAAGAAAGAAAAGCATCAAGGGAATGAAAGGCCATATGAAGAAGATAGCGCATGATCAACATGCAAGTATGGTGCTTGTGTGCATTATCTCAGTTGTTGATGATACAAAGCTCATTAGGAAGATTATCATCAATGAGCTTGAAAAAGATTTGAAGGAGCTCATTTTGGACAAGAATGGAAGGCGTGTATTACTGCAACTCTTGCATCCAAATTGTTCACGCTACCTCAGTCCTGACGATCTTGCTTCTTTAAATTTATCAATACCTTCTCTTTGCGACAAGGGTGAATCAGGAGTTGACAAGGCTGAAGAGAAGGTGGAGAGTCGCATGGGTGAAATAGAAGGTGAGGTTGATGGAAGCAAGGTTTCTGCTGAGGGCTCTGAGGTTGTGGAGGGTGGTAAAAAAGATCCTGTTATCAGAAGGCATGAGTTGTTGGTGGATAGCGGGCTTGCTGAGAAGCTTGTAGACGCATGCATCAATGATGCTGGGGAAATTTTAAGGTCAAATTTCGGCCGAGAAGTAATGTATGAGGTTGCGACTGGGGGTGCTGATGGCATTCTTCAATTGAAATTGGGTGAAAAGCTGAGTGCTTTATATGAAGCTATTGCTTCACTTGCAGCAGAGCCTAAATCTGAAGACGCAGCCTCAGGAGATGAGCATGTCCTTGAAAATTTCCACTCTAGTAGGACTATAAGAAAGCTAATCTTGGACTGCCCTGCATTTGCCCTCACTTTGTGGACCAAAGCACTTGAAGGGAAATCCAAAACGTGGGCCCAAGGTCACAGCTGTAAGATAATTCAAGCTTTCCTGGAATCCTCGGACTCCAATGTACGTGAGATTGCAAGAGTAGAGTTGCAGTCCTTGATAGACGAAGGTGTACTCAAAATCCCAGACACGAAGCAGTCTGCCAACAAAAGCTAA 1977 42.59 MAPKSQQNTKPKKRKQISGNKGSSHGSISKKSKFVNDKPSKSPSLGTVGRPFKPPKQKENQHFKSKVEKSEAQKENSVPTTNRDRRVQAKELAEARKKKRKRHYDLEHELARLWEEMRKRDITKEDRSKLISKALENMKGKIPEIAGSHVSSRVLQTCVKHCTDAEREAVFEELKPHFLTLACNTYAVHLVKKMLDNASKKQLTVFVSSLRGHVASLLRHMVGSIVVEHAYHLANAAQKQTLLHELYSLELQLFKDLVSMKESRLVDIISKLDIQKASVSRHMTSVIQPILEKGIVDHSIIHRVLVEYFTVADKTSAAYVIQQLSSSLLVRMIHTRDGSRIGILCIKHGSAKERKKSIKGMKGHMKKIAHDQHASMVLVCIISVVDDTKLIRKIIINELEKDLKELILDKNGRRVLLQLLHPNCSRYLSPDDLASLNLSIPSLCDKGESGVDKAEEKVESRMGEIEGEVDGSKVSAEGSEVVEGGKKDPVIRRHELLVDSGLAEKLVDACINDAGEILRSNFGREVMYEVATGGADGILQLKLGEKLSALYEAIASLAAEPKSEDAASGDEHVLENFHSSRTIRKLILDCPAFALTLWTKALEGKSKTWAQGHSCKIIQAFLESSDSNVREIARVELQSLIDEGVLKIPDTKQSANKS 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5478093 5483959 + CePI673135_06g004880.1 Cec06g0488 205225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0488 658 PANTHER UNCHARACTERIZED 1 652 IPR040059 GO:0003723(InterPro)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0006417(PANTHER)
Cec06g0488 658 SMART pum_5 360 397 IPR001313 GO:0003723(InterPro)
Cec06g0488 658 SMART pum_5 324 359 IPR001313 GO:0003723(InterPro)
Cec06g0488 658 SMART pum_5 398 435 IPR001313 GO:0003723(InterPro)
Cec06g0488 658 SMART pum_5 209 244 IPR001313 GO:0003723(InterPro)
Cec06g0488 658 SMART pum_5 173 208 IPR001313 GO:0003723(InterPro)
Cec06g0488 658 SMART pum_5 137 172 IPR001313 GO:0003723(InterPro)
Cec06g0488 658 ProSiteProfiles Pumilio RNA-binding repeat profile. 209 244 IPR001313 GO:0003723(InterPro)
Cec06g0488 658 MobiDBLite consensus disorder prediction 55 87 - -
Cec06g0488 658 SUPERFAMILY ARM repeat 118 430 IPR016024 -
Cec06g0488 658 FunFam Pumilio homolog 24 109 455 - -
Cec06g0488 658 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 109 482 IPR033133 GO:0003723(InterPro)
Cec06g0488 658 Pfam CPL (NUC119) domain 484 587 IPR012959 GO:0003723(InterPro)
Cec06g0488 658 MobiDBLite consensus disorder prediction 1 87 - -
Cec06g0488 658 ProSiteProfiles Pumilio RNA-binding repeat profile. 173 208 IPR001313 GO:0003723(InterPro)
Cec06g0488 658 Pfam Pumilio-family RNA binding repeat 151 174 IPR001313 GO:0003723(InterPro)
Cec06g0488 658 Pfam Pumilio-family RNA binding repeat 213 246 IPR001313 GO:0003723(InterPro)
Cec06g0488 658 Gene3D - 109 440 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0488 K14844 - - csv:101210633 1142.1
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g138 . . . . . . . . Cmo08g01220 . . . . . . . . . . . . . . . Cla06g00454 Cam06g0484 Cec06g0488 Cco06g0487 Clacu06g0471 Cmu06g0472 Cre06g1245 . . . . . Csa06g01771 Chy11g01540 . . Blo07g00164 . . . Bpe13g00677 . Bma06g01487 . . . Cma08g01249 . Car08g01122 . . Cpe17g00043 Bhi12g02022 Tan06g2715 . . Hepe03g0075 . . . . . . . . . Lsi09g01460 . . Cme11g02048
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010706 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 2 1 31