Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0498 ATGTCAAACGGATTTGCCAATGGCGAAGGTGATAAAAAGAAGAAGAAAATCGCCATCGTTAGTGTCTCTTCTTTAATCCTGGTGGCAATGGTTGTCGCCGTCACCGTCGGCGTCAACAGTGCACCTCACGAAGAGCACAGCGACGATCACGGTGGCGAGACTCATGAGATTTCATCAACGACTAAAGCAATCCAAGCCATTTGTCAACCTACGGATTACAAAGAATCCTGCGAGAAGAGTCTAATGGCAGAAGCCGGTAATACAACAGACCCAAAAGAGCTAGTGAAAGTGGGATTCAAAATCGCCACGAGGAATCTAAACGAGGCGATAAGAAATTCCACCACGCTTCAAGAATTAGCCAAAGACCCAAGAACCAACCAAGCCCTTCAAAATTGTCGTGAGCTTTTAGAATATGCGATTGATGATTTGAACGAATCGTTCGAAAGAATCGGGACCTTCCAAATGTCCAAACTGGATGAGTTCGTTGGGGATTTAAAGATTTGGCTGAGTGGGGCCATGACGTACGAACAAACTTGTTTGGATGGATTTGAAAACACGACAGGCGATGCTGGGGAGAGAATGAAAGAGTTTCTGAAGTCAGCTCAAGAAATGACAAGCAACGGTCTGGCAATAGTGAATGAATTGTCTGGCATTTTGGGGACACTCCAAATCCCTGGAATGAGTGGACGACGACTTTTGGAAGACGAAATGCCATCATGGGTGAGCGAGGGAAAGAGGCAACTGATGCAGGCAGGTGCGGCATCCATGAAGCCCGATTTGGTGGTGGCTCAAGATGGGAGTGGGAAGTACAAGACTATAAATGAAGCTTTGGTTGATGTGCCTTTGAAGAGTAACAAAACGTTTGTGATCTATGTGAAGGCTGGAATCTACAAGGAAATTGTTGTTATTCCAAAGGCTATGACTCATCTGACCATGTACGGTGACGGTCCAACCAAAACGGTGGTTACTGGTAGCTTAAACTTTATTGACGGTATTCAAACATTCAAGACGGCTACCTTCTCTGCAATTGGAGCTAATTTCTACGCTAGAGACATGGGATTCGAGAACACCGCTGGGGCTGCAAAGCACCAAGCCGTAGCCCTACGAGTCCAATCCGATAGATCAATCTTCTACAACTGTCAAATAGATGGCTACCAAGATACCCTCTACGCACACGCTCACCGTCAGTTCTACAGAGACTGCACAATCAGTGGCACCATCGACTTCGTGTTCGGTAACGCCGCCACCATTTTCCAGAACTGCAAGCTGGTGGTCCGAAAGCCAATGGATAACCAACAATGCATCGTCACGGCTCACGGCCGTCTCAACCGCCGTGAACCCACAGCATTGATCTTCCAAAGCTGCCATTTCATGGGTGACCCTGCTTACTTGCCCTTCAAGAACATCAACAAGGCATACTTGGGACGTCCTTGGAAGGAATATTCACGAACCATTATAATCGGGTCTCAAATAGACGATATCATCCAGCCTGAAGGATGGTTGCCATGGATGGGCGATTTTGGGCTCAAAACCTTGTTCTACGCCGAGGTACAGAACAAAGGGCCAGGGGCTGATGAAAGCAAGAGAGTGAAGTGGCGAGGAATTAAACATATTACGCCACAACACGCCGCGGATTTCACTCCTAGACGATTTATTGATGGCGATGCTTGGATTCCTGCTAAGGGAATTCCCTACTCTTCTGGAATGATGTGA 1713 47.11 MSNGFANGEGDKKKKKIAIVSVSSLILVAMVVAVTVGVNSAPHEEHSDDHGGETHEISSTTKAIQAICQPTDYKESCEKSLMAEAGNTTDPKELVKVGFKIATRNLNEAIRNSTTLQELAKDPRTNQALQNCRELLEYAIDDLNESFERIGTFQMSKLDEFVGDLKIWLSGAMTYEQTCLDGFENTTGDAGERMKEFLKSAQEMTSNGLAIVNELSGILGTLQIPGMSGRRLLEDEMPSWVSEGKRQLMQAGAASMKPDLVVAQDGSGKYKTINEALVDVPLKSNKTFVIYVKAGIYKEIVVIPKAMTHLTMYGDGPTKTVVTGSLNFIDGIQTFKTATFSAIGANFYARDMGFENTAGAAKHQAVALRVQSDRSIFYNCQIDGYQDTLYAHAHRQFYRDCTISGTIDFVFGNAATIFQNCKLVVRKPMDNQQCIVTAHGRLNRREPTALIFQSCHFMGDPAYLPFKNINKAYLGRPWKEYSRTIIIGSQIDDIIQPEGWLPWMGDFGLKTLFYAEVQNKGPGADESKRVKWRGIKHITPQHAADFTPRRFIDGDAWIPAKGIPYSSGMM 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5588404 5590116 + CePI673135_06g004980.1 Cec06g0498 205235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0498 570 FunFam Pectinesterase 253 569 - -
Cec06g0498 570 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Cec06g0498 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 216 IPR035513 -
Cec06g0498 570 MobiDBLite consensus disorder prediction 41 61 - -
Cec06g0498 570 Gene3D - 253 569 IPR012334 -
Cec06g0498 570 SMART PMEI_2 59 211 IPR006501 GO:0004857(InterPro)
Cec06g0498 570 MobiDBLite consensus disorder prediction 42 56 - -
Cec06g0498 570 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Cec06g0498 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 216 IPR035513 -
Cec06g0498 570 FunFam Pectinesterase 60 216 - -
Cec06g0498 570 CDD PMEI-like_3 66 217 - -
Cec06g0498 570 SUPERFAMILY Pectin lyase-like 256 568 IPR011050 -
Cec06g0498 570 NCBIfam pectinesterase inhibitor domain 59 215 IPR006501 GO:0004857(InterPro)
Cec06g0498 570 Pfam Pectinesterase 259 555 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cec06g0498 570 PANTHER PECTINESTERASE 15 560 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cec06g0498 570 Pfam Plant invertase/pectin methylesterase inhibitor 62 211 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1797 Cec-Chr3:36200064 Cec06g0498 Cec-Chr6:5588404 5.10E-194 dispersed
Cec06g0498 Cec-Chr6:5588404 Cec07g1549 Cec-Chr7:31032126 9.60E-113 dispersed
Cec11g0021 Cec-Chr11:306833 Cec06g0498 Cec-Chr6:5588404 8.40E-136 transposed
Cec05g0742 Cec-Chr5:6111351 Cec06g0498 Cec-Chr6:5588404 2.00E-203 wgd
Cec06g0498 Cec-Chr6:5588404 Cec09g0544 Cec-Chr9:4669231 2.30E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0498 K01051 - csv:101221958 1033.86