Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0545 ATGTCTCTCAAGAGCATCTTCCAAGATATGAGGTCCCGCTCACGCTGTATGGTGCAGGACGCCTCCGCTCCGGAGCCCAGGGACGCTCTGGACCAAAGCTGTTGGGCCAATATGCCTCAGGAGCTTCTCCGGGAGGTTTTGATCAGAATCGAGGCGTCCGAGACCTTTTGGCCGCCTAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGCCGGAGCTGGCGAGCCATTACTAAGGAGATCGTTAAAACGCCGGAGGTTTCCGGTAGGTTGACGTTCCCGATCTCTATCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTTTGACCAGTGCACTAAGTGATGATGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCGACCTACACAGATTATATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAATTTCCTAGGAACCAAGTTCACAATCTTCGATGGGCAACCACCACATTCGGGAGCCAAGATCACTAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCCCCGAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCGAGGAGAATGCAATGTATCATGGACTCTATTCCCACTTCTGCAGTTGAACTTGGAGGAGTGGCTCCAACGCCGACCGAACTTTCTTTGAGCAATGTGGAATTGTTTCCATCATTCCCATTCCTAAGGTCAAAATCCAATGCGGATAGCTTACTTTCTGAACCTTTGGGCAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAAACTCCCAGGTGGCATGAACAGCTTCAATGCTGGTGTCTGAACTTTCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAATTAGTTGCTTCTCCGGAAAATGATACACCTACACCAGAACATGAAAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCACACATCGTTTAACAGGGAATGGACGCTCAATTTGAAGGTCTACTGA 1134 46.74 MSLKSIFQDMRSRSRCMVQDASAPEPRDALDQSCWANMPQELLREVLIRIEASETFWPPRKSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTSALSDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMQCIMDSIPTSAVELGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENDTPTPEHEKIILQFGKVGKDLFTMDYHTSFNREWTLNLKVY 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6051805 6054955 - CePI673135_06g005450.1 Cec06g0545 205282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0545 377 CDD F-box_AtTLP-like 35 79 - -
Cec06g0545 377 Pfam Tub family 97 363 IPR000007 -
Cec06g0545 377 SUPERFAMILY Tubby C-terminal domain-like 84 364 IPR025659 -
Cec06g0545 377 PANTHER TUBBY-RELATED 22 366 - -
Cec06g0545 377 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Cec06g0545 377 Gene3D Tubby Protein; Chain A 95 368 IPR025659 -
Cec06g0545 377 SUPERFAMILY F-box domain 26 78 IPR036047 GO:0005515(InterPro)
Cec06g0545 377 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Cec06g0545 377 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cec06g0545 377 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cec06g0545 377 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Cec06g0545 377 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cec06g0545 377 PRINTS Tubby superfamily signature 316 332 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0545 Cec-Chr6:6051805 Cec08g0347 Cec-Chr8:8778268 1.20E-108 dispersed
Cec05g0683 Cec-Chr5:5601650 Cec06g0545 Cec-Chr6:6051805 1.10E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29749 PF01167 Tub 6.70E-96 CL0395 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0545 K19600 - csv:101203437 698.353