Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0546 ATGGCGCCTGAAATGATGGTCGAATCGGGCTTGTCGATAGTGGATTTTGGGATGGAATTGGTGGCAGATCATACTTCGGTAGTTTCTTTAAACTTATTTGTAGCTCTTCTTTGCGGTTGCATTGTTATTGGCCATTTGTTAGAGGAAAATCGATGGATCAACGAGTCCATTATAGCCCTTGTCATTGGCTTGTGTACCGGCATCATAATACTGCTAACAACTAGAGGGAAAAGCTCGCATTTATTTTTGTTTAATGAAGAGCTTTTCTTTATTTATCTCCTTCCGCCTATCATTTTCAACGCCGGGTTCCAAGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCGTTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAGAAAATGAATATTGGTTCCCTTGATCTTGGAGATTATCTAGCTATTGGAGCAATTTTTTCTGCAACAGACTCTGTTTGCACCTTACAGGTTCTTAATCAGGACGAGACGCCTCTTCTGTATAGCCTGGTTTTTGGGGAAGGTGTTGTAAATGATGCCACATCGGTTGTGCTATTCAATGCAATCCAAAACTTTGACCTTTCTCATATGAATTCAAGCATCATTCTGCAATTCATTGGGAACTTTTTGTATCTGTTCATTGCAAGTACTGTGCTGGGAATTTTAGTTGGCCTCCTTAGTGCATACATAATTAAGAAGCTCTACTTTGGCAGGCATTCTACTGATCGTGAAGTTGCTCTAATGATACTCATGGCGTATTTCTCTTATATGCTAGCTGAACTCTTCTATCTAAGTGCAATTCTCACAGTATTCTTTTGCGGCATTGTTATGTCTCACTATACATGGCATAACGTGACTGAAAGTTCAAGAGTCACTACAAAGCATGCTTTTGCCACCCTTTCTTTTGTTGCCGAGATCTTCATCTTTCTTTACGTTGGCATGGATGCGCTTGATATCGAGAAGTGGAGATTTGTTAGCCACAGTCCTGGAAAATCAATTGGGGTGAGCTCAATACTGTTGGGATTGGTTCTGGTTGGAAGAGCAGCATTCGTTTTTCCTTTATCCTCCTTGTCCAATCTGACCAAGAAGTCCTCGCATGAGAAACTCAGCTTGGAACAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTATCCATGGCACTTGCATATAATCAGTTCACTAGGTCAGGCCACACCCATTTACCAGGCAATGCAATCATGATCACCAGTACCATCACAGTTGTTCTTTCCAGTACAGTGGTATTTGGAATGATGACGAAACCCCTAATAGGAATTTTGCTACCCCAACCAAAATACACAATGAGCATGCTCTCTTCCGAACCCTCTTCCCCAAAATCATTCACGGTCCCACTCCTCGGTAATGACCAAAATACCCCTTCCCCTCTTGGCCTGTTTCTGAGAATCCCATCCCATACAGTTCACCATTACTGGCGAAGATTTGATGACGCCTTTATGCGCCCTGTGTTTGGAGGACGGGGCTTTGTGCCCTTCATCCCAGGCTCCCCTACGGAAGACCTAACGCAACAATGGCAAACTGAAGGAGTGGAAGCCATTGATGATAATAAAACCATTCTTATATAG 1650 42.79 MAPEMMVESGLSIVDFGMELVADHTSVVSLNLFVALLCGCIVIGHLLEENRWINESIIALVIGLCTGIIILLTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDLSHMNSSIILQFIGNFLYLFIASTVLGILVGLLSAYIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKSSHEKLSLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVVFGMMTKPLIGILLPQPKYTMSMLSSEPSSPKSFTVPLLGNDQNTPSPLGLFLRIPSHTVHHYWRRFDDAFMRPVFGGRGFVPFIPGSPTEDLTQQWQTEGVEAIDDNKTILI 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6074491 6080756 + CePI673135_06g005460.1 Cec06g0546 205283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0546 549 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec06g0546 549 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec06g0546 549 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec06g0546 549 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec06g0546 549 Pfam Sodium/hydrogen exchanger family 34 445 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cec06g0546 549 Gene3D - 150 201 - -
Cec06g0546 549 PANTHER SODIUM/HYDROGEN EXCHANGER 26 536 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(InterPro)|GO:0015385(PANTHER)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1191 Cec-Chr1:18976796 Cec06g0546 Cec-Chr6:6074491 4.90E-25 transposed
Cec03g1708 Cec-Chr3:35354599 Cec06g0546 Cec-Chr6:6074491 5.00E-220 transposed
Cec09g2194 Cec-Chr9:38864805 Cec06g0546 Cec-Chr6:6074491 1.40E-166 transposed
Cec06g0546 Cec-Chr6:6074491 Cec09g0616 Cec-Chr9:5359074 8.70E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0546 - - - 0.0