Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0550 ATGGCTCCCTTTGGGAGTGATCGGGTGGACATTGATCGTACGGACACTGAAGTCTTTGACGGCCATCTTTCACCGCCCACATGTTCTGGTGACGAAACGGATAAAGCTTCATATTCTCCAGGAACGGTTGACTTTTATGATAACGAGTTTGAAACTCAAGTAGTAGTGAATCTTGATGGAGAAACTCAAGTAGTGGATCATGTAAATGATGAGTTTGAAACTCAATTAGTGAATCCCCTCGAAGAAACTCAAGTGTTTGATATTGCGTGTGAAACCCAAATCTCGAGTCTCTGTGGTGAAACCCAACTACTTGATGATCCCATTCCGGATCGTGTAAAAAATATGGACTTCAACACTCAAATATTGGATGACTTTGATGATGAAGTGGCTGGTGAATGTTATGACGATGAAGGAACAGAGACAACTGAAATCAATGTTGATGACGATCTATCTGGTGATGAATCAGCCCAAAGTTTTGATCAATCAGTGGATAAGGAGAAGGGCCGATTTACCTCTCTTCCTGGACATGATGTGAGGAAAGACTTAGAGGTGCTACCAGATATGTTGCCTGATAAGAAATGTAATTCAGGACCCACAAGACTTTCTTTGTTGCGCGCAGCCTCATTGCGTTCCTCTGGTTTAGCAGCCCGTTGTTCTGCCTTGAAGACTAGAAGCATTGGGCCTCCTGTTATGATTGACAAGGATATAGAAAAATCATCCATAAAAGATAATCATGTTGACCGGCAGAACGTTCTTGGGCAATGCAATGTGAATGATGGAGATTCAGGTAACATTAAGTGCAGGGTTGGCAGTTCAGCAGTGAGAAAGCTTTTTACTGAGGATTATACACCTGTTGGAGATTTAGGAGATCACACAAACTGTGATATCAGTGACGTTGACCCACATCAGTTGACTGCCTGTGATGGCGATGGTGATCAGTTGGCAGGGTTAAGCTATGTTGACTCTCAAGAACCTGGGGAATTAACTCAAGACAATGCTCTTGATTTTGTTGAAAAGTTTCTTAAAGATAATCCTTTGGAGTTTGATCTAGATGGAGGTATGCATAAACTGGATGCTATGGTGCAACCAAAGTCTGTTCCTAATCCAAGAGGACAATATAATATGGCTAACATTGTTAACTGTATAAGAACAGTTGGAGAATCAAGAGTTTTCGATTGGGATGATAATCGGGAAGATGAAGGAGGTGGTGATATTTTCCGCAGAAGGAAGGAAGAGTTTTTCACTAAACCTCGAGAATCAAAAGGAAGAAGATTGGACCTCAACGGTGACAAGGAAGCATCTTTGAGTATCCAAAATATGAAATCGAGGTTATTTTGTTCTGATTCACGTCTAGAGTTGAGAAAAGGAAAAGAGAATAATGAGTTATCCCGAGAAGCCAACGTCAAATGCAAAAGGAACCTATCCTATAAGTTGGATCAGGAGAATGATGGTGATGCGTGTGGGGGAGAGTTGGAAGACAATGGCGTCCAGCCTGATCAGCAAGAGGTCTCTAATGTAGGTTTTGATACTCAGATGGCAGCTGAGGCAATGGAAGCATTATTCAATGATGAGAATATCCACAAGTTAGTTCATAATGAAGCAAATCAACATTTGGAAAATGGTCCAGTGGATTCTTTCAGAGGTTCTCCTTCTAGAAAGCCAGACTCTAGCTCGAAACCAAGGCGATCCTCTAGGGGACATGCTTCTAGTTTGGAGGTTACCCCTAGGCAGTCAAAAAAAAGAAACCAGAAGTTTTCTGGAGATCTCATGAAGGCATGTGGAAATGAGACTGTGAAATTGTCAGAGAGGAGTAAGAAAAGAGATGCTGATGCAATCAGCGGGAATGAAAACAATGGCCGTGATTCCAGTGATGGATGTAACATGGTTAAGAAGCGGCTTTTACGTGGAAAAGTTATTGAGGTTTCACCTGTTGCACGCCAAACTAGGCAATCGATGATAGCAAATCAATCAAAGATGGCTAAAATTGCATCTGGTGGATGTGAGCAGTCAGTTACAAAGGTAGGTTCGTTAATCAAGAAACGTAGTGGTGATCGAGCCATCAGGGATTTCGAAGCTAAGAGAACTAAATCTCTAGAGGCAGCTTCCAAGATTCTCAAGACGAAGTCAAAAGGCACCGAAAATTATGCAAAGAACTCCATAGGAGAACGAAGATTGTGTAATATGTTAGCTGGTCAGGTAAGCCTGCCTGATGATTTACTTGGACAAACTATGAATAGGCACAAGAGGACATGTAACATGAAGAAAACACGATCGTCGTTATGTGTTCTTTCACCTCCTTTAAACAAACACTTGGGAAGACCAACTGTCGGTAGAACAAGTTCAGAAAAAGTTCATGGTGGAACTATAACTGCTGATATGAGTGGTCAATTGTCCATTGAAGATTCCCACCTGCCAAGTTCCGTTCAGCAGTTAAATAAAAAGAATGATGGATGTTCGGTTTCTTCTATTGTAAAGATTACCTCAGATGAATCTCCTAGTAAAAGGCACAAACCATCTGTTACTGTTTGTACTACTCCACCTGATAACTGTATGACGCCTATAAATGCTGCATCACCTGTCTGTATGGGCAGTGAATATTACAAACAATCGTGCAAAAAGAACCTCTCAAAATCAAGTCTTTTGAAAGAACTTCGTGATTTAACTGCTCCGGGGCTTGTTTCAAGATCTTTTCCAATGGAGTCAAGAAAGAGAAAAGATATGAATGATGTTCGAGTCTTGTATAGCCAACACCTTGATGAGGACATAATCAAACAGCAAAAGAAGACGTTGACTCGCCTAGGGGTTACTGCAGTATCCTCCATGGCTGAGGCAACACATTTCATAGCCGATAAATTTGTACGTACAAGGAATATGTTAGAAGCCATTGCTCTGGGTAAGCTTGTGGTGACACACCTATGGATTGAGAGTTGTGGACAGGCGAACTGCTTCATCGATGAAAAAAATCACATCCTACGAGATGCCAAAAAGGAGAAGGAATTTGGATTTAGCATGCCAGGTTCATTGGCATGTGCTCGCCAGCGTCCTCTTCTAGAGGGTCGACGAGTGTTGATTACACCAAATACAAAGCCTGGGAAAGCCATCATTTCGAGCTTGGTCAAGGCAGTAAAGGGTCAAGCTGTAGAGAGGATCGGAAGGTCTATGCTGAAAGATGATCAAATTCCAGATGATTTGTTAGTTTTGTCGTGTGAAGAAGATTACGATAAGTGCTTGCCTTTTCTTGAAAAAGGCGCTGCAGTGTTTAGTTCCGAGCTGCTGCTTAATGGTATCGTAACTCAGAAGCTTGAGTTTGAAAGGCATCGTCTTTTCGTAGATCACGTCAAGAGGACTCGTTCGACGATATGGCTCAAGAAAGATGGCAATAAGTTTCATCCTGTTACCAAACATCAGTAA 3411 41.84 MAPFGSDRVDIDRTDTEVFDGHLSPPTCSGDETDKASYSPGTVDFYDNEFETQVVVNLDGETQVVDHVNDEFETQLVNPLEETQVFDIACETQISSLCGETQLLDDPIPDRVKNMDFNTQILDDFDDEVAGECYDDEGTETTEINVDDDLSGDESAQSFDQSVDKEKGRFTSLPGHDVRKDLEVLPDMLPDKKCNSGPTRLSLLRAASLRSSGLAARCSALKTRSIGPPVMIDKDIEKSSIKDNHVDRQNVLGQCNVNDGDSGNIKCRVGSSAVRKLFTEDYTPVGDLGDHTNCDISDVDPHQLTACDGDGDQLAGLSYVDSQEPGELTQDNALDFVEKFLKDNPLEFDLDGGMHKLDAMVQPKSVPNPRGQYNMANIVNCIRTVGESRVFDWDDNREDEGGGDIFRRRKEEFFTKPRESKGRRLDLNGDKEASLSIQNMKSRLFCSDSRLELRKGKENNELSREANVKCKRNLSYKLDQENDGDACGGELEDNGVQPDQQEVSNVGFDTQMAAEAMEALFNDENIHKLVHNEANQHLENGPVDSFRGSPSRKPDSSSKPRRSSRGHASSLEVTPRQSKKRNQKFSGDLMKACGNETVKLSERSKKRDADAISGNENNGRDSSDGCNMVKKRLLRGKVIEVSPVARQTRQSMIANQSKMAKIASGGCEQSVTKVGSLIKKRSGDRAIRDFEAKRTKSLEAASKILKTKSKGTENYAKNSIGERRLCNMLAGQVSLPDDLLGQTMNRHKRTCNMKKTRSSLCVLSPPLNKHLGRPTVGRTSSEKVHGGTITADMSGQLSIEDSHLPSSVQQLNKKNDGCSVSSIVKITSDESPSKRHKPSVTVCTTPPDNCMTPINAASPVCMGSEYYKQSCKKNLSKSSLLKELRDLTAPGLVSRSFPMESRKRKDMNDVRVLYSQHLDEDIIKQQKKTLTRLGVTAVSSMAEATHFIADKFVRTRNMLEAIALGKLVVTHLWIESCGQANCFIDEKNHILRDAKKEKEFGFSMPGSLACARQRPLLEGRRVLITPNTKPGKAIISSLVKAVKGQAVERIGRSMLKDDQIPDDLLVLSCEEDYDKCLPFLEKGAAVFSSELLLNGIVTQKLEFERHRLFVDHVKRTRSTIWLKKDGNKFHPVTKHQ 1136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6120033 6126421 + CePI673135_06g005500.1 Cec06g0550 205287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0550 1136 CDD BRCT_PAXIP1_rpt6_like 1016 1102 - -
Cec06g0550 1136 MobiDBLite consensus disorder prediction 479 501 - -
Cec06g0550 1136 Gene3D BRCT domain 897 1014 IPR036420 -
Cec06g0550 1136 MobiDBLite consensus disorder prediction 598 614 - -
Cec06g0550 1136 CDD BRCT_MDC1_rpt1 910 984 - -
Cec06g0550 1136 MobiDBLite consensus disorder prediction 537 626 - -
Cec06g0550 1136 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 902 991 IPR001357 -
Cec06g0550 1136 SMART BRCT_7 904 981 IPR001357 -
Cec06g0550 1136 Gene3D BRCT domain 1015 1116 IPR036420 -
Cec06g0550 1136 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 59 1109 IPR051579 -
Cec06g0550 1136 Pfam BRCT domain, a BRCA1 C-terminus domain 1015 1102 IPR001357 -
Cec06g0550 1136 SUPERFAMILY BRCT domain 898 1007 IPR036420 -
Cec06g0550 1136 ProSiteProfiles BRCT domain profile. 902 991 IPR001357 -
Cec06g0550 1136 MobiDBLite consensus disorder prediction 143 172 - -
Cec06g0550 1136 MobiDBLite consensus disorder prediction 1 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0550 K20780 - - csv:101217520 1788.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0550 Cec-Chr6:6120033 Cec09g0621 Cec-Chr9:5405246 1.10E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g375 . . . . Bpe04g01172 . . . Cmo08g01173 Cmo17g00292 . . . . . . . . . . . . . . Cla06g00511 Cam06g0550 Cec06g0550 Cco06g0557 Clacu06g0536 Cmu06g0536 Cre06g1304 . . . . . . Chy11g01464 . . . . . . . . . . . . Cma08g01199 Cma17g00302 Car08g01076 Car17g00278 Cpe12g00255 Cpe17g00099 Bhi12g01747 . . . . . . . . . . . . . Lsi09g01390 . . Cme11g01970
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010432 1 1 1 1 1 1 2 0 1 1 0 1 0 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 1 1 32