Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0556 ATGAGAGCTTCAAATCATGGCTTCCCCCTCTTCTCTGTACTGGTTTTCATTACTCTTCTTGCTCTCCAGGTCGTCAATGGAGATTTGATCAATAATTTCTATATGAAAAGCTGCCCCCAAGCTGAGAGAATCGTTCAAGACGTCACCTTTCGTCTCGTCCGATCCAATCCCAGCCTTAGCGCTCAACTCCTCAGACTTCACTACCACGACTGTTTCGTTCGAGGATGTGATGGATCAATTCTGTTAGATACCGTTGGAACAAACCAATCAGAGAAGGATGCAAGGCCGAACCTATCCCTATTAGGGTTTGATGCCATTGACCAAATCAAGTCCGAGGTTGAGAAAGCTTGCAGTGGAGTTATTTCCTGTGCTGATATTCTTGCTCTTGCTGCCCGCGACGCAGTTTCCTTTCCGTCCAAAAACCGGCCGCTCTGGCCAGTCTTAACCGGAAGAAGAGATGGAACAGTTTCACGATCATCAGAAGTTACCGGTAACATGCCGTCGCCGTTCTCCGATTTCGCCACTCTTAAGCAAATCTTCGAGAAGAAAGGCCTAACTGTGAGCGATATGGTGATTTTATCAGGTGCTCACACCATTGGAGTTGCTCATTGTGGCGCGTTCTCAAGGAGGCTTTATAACTTCACAGGCAAAGGAGATGCAGATCCTTCATTAGATCCAGAATATGCAGATTTTCTTAGAACAAAATGTCCAAATCCAGCTGACTCTTCCATTACAGTTGAAATGGATCCAAAGAGTTCTCATTCCTTTGATAGTGACTATTTCAAAATTCTCACACAAAAAAAGGGTTTGTTTCAATCCGATGCCGCGCTTCTCACCGACGCTTCGTCGTCTCAGGCCGTCAAACAGTTGCAGAATCCAAAAGCTTTCTTTTCTAGCTTTGCTAATTCCATGCTGAAGATGGGAGCCATTGAAGCAATTTTTTCATGGATTGTCGTCGTTGCTATGCCACGGCCACCTGCCCCATCGCCGACGACGGCCTCCACAGTTCCAATCTACTCAACTCCAATCGACATTTTCAGCAAGGCCATGTGTGTTGTTTATGAAGTATTCAAAGTCTCAATGCATTGTAAAGCATGCGAAAGAACTGTGGCCAAAGTCATTTCCAAATTCAAAGGGGTGGAGAAGTTTGTGACAGACATGGGAAAGCACAAGGTTGTAGTGATGGGGAAGTTTGATCCCCATAAAGTTATGAAGAAACTAAGAGAAAAGACAGGAAAAGCCGTTGAGATGGTGGTCGACAAAGGTTCAATGGTGAAAGATGCAACCGTTGCCAAGGATTCGGAGCGATCGGACCCGAATAATTCCAATCAGTTGATGATGTTAAATTGTTGCAAGGAGAGTGCTCAGTTGCTGGTTTTGTTCAGTGATGAGAATCCAAATGCTTGTTGCATTATGTAG 1419 44.96 MRASNHGFPLFSVLVFITLLALQVVNGDLINNFYMKSCPQAERIVQDVTFRLVRSNPSLSAQLLRLHYHDCFVRGCDGSILLDTVGTNQSEKDARPNLSLLGFDAIDQIKSEVEKACSGVISCADILALAARDAVSFPSKNRPLWPVLTGRRDGTVSRSSEVTGNMPSPFSDFATLKQIFEKKGLTVSDMVILSGAHTIGVAHCGAFSRRLYNFTGKGDADPSLDPEYADFLRTKCPNPADSSITVEMDPKSSHSFDSDYFKILTQKKGLFQSDAALLTDASSSQAVKQLQNPKAFFSSFANSMLKMGAIEAIFSWIVVVAMPRPPAPSPTTASTVPIYSTPIDIFSKAMCVVYEVFKVSMHCKACERTVAKVISKFKGVEKFVTDMGKHKVVVMGKFDPHKVMKKLREKTGKAVEMVVDKGSMVKDATVAKDSERSDPNNSNQLMMLNCCKESAQLLVLFSDENPNACCIM 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6183052 6188731 + CePI673135_06g005560.1 Cec06g0556 205293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0556 472 ProSiteProfiles Heavy-metal-associated domain profile. 352 416 IPR006121 GO:0046872(InterPro)
Cec06g0556 472 SUPERFAMILY HMA, heavy metal-associated domain 353 411 IPR036163 GO:0046872(InterPro)
Cec06g0556 472 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cec06g0556 472 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cec06g0556 472 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cec06g0556 472 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cec06g0556 472 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cec06g0556 472 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cec06g0556 472 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cec06g0556 472 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cec06g0556 472 FunFam Peroxidase 32 179 - -
Cec06g0556 472 CDD secretory_peroxidase 32 311 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cec06g0556 472 Gene3D - 354 421 - -
Cec06g0556 472 CDD HMA 356 416 IPR006121 GO:0046872(InterPro)
Cec06g0556 472 Pfam Heavy-metal-associated domain 356 411 IPR006121 GO:0046872(InterPro)
Cec06g0556 472 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Cec06g0556 472 PANTHER PEROXIDASE 25-RELATED 30 312 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cec06g0556 472 FunFam Peroxidase 167 307 - -
Cec06g0556 472 Pfam Peroxidase 46 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cec06g0556 472 Gene3D - 32 312 - -
Cec06g0556 472 ProSiteProfiles Plant heme peroxidase family profile. 28 310 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cec06g0556 472 Gene3D Peroxidase, domain 2 167 307 - -
Cec06g0556 472 SUPERFAMILY Heme-dependent peroxidases 29 313 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cec06g0556 472 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cec06g0556 472 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cec06g0556 472 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cec06g0556 472 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cec06g0556 472 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0556 Cec-Chr6:6183052 Cec06g1280 Cec-Chr6:25954766 1.70E-62 dispersed
Cec06g0554 Cec-Chr6:6164893 Cec06g0556 Cec-Chr6:6183052 1.20E-155 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0556 K00430 - csv:101215642 509.22