Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0570 ATGCGAGGCCACGATTGGATCAATACTGCCCTTCCTGATGAGTTGATTGTTGAGATCTTCCGGTGCCTTGATTCGAAGCTCAGTCGCGATGCTTGTTCTCTCGTTTGCAGGCGTTGGCTCAAGCTCGAGCGCCTCAGCCGGACCACCCTACGAATCGGTGCTACTGGTAGCCCCGACCTCTTTGTTCAGCTACTCGCTCGCCGTTTTGTCAATGTCAGAAATGTCCACATTGACGAGCGATTGGCGATTTCTTTTTCCCTTCATCCACGAAGAAGACGTCGCAAAGAAGCCATGCGCTTGCCATACCATGCAACTGATAATACTGGGGCTGAAGGTGCGTTGGAGTCTTCGTGTCTGTCAGATGCTGGGCTATTTGCTCTCTCCGTAGGTTTTCCAAACCTCGAGAAACTAAGCTTAATTTGGTGCTCTAATATTTCAAGTCACGGCTTGACAACCCTAGCTGAGAAGTGTAAATTTTTGAAGTCACTGGATCTACAGGGCTGCTATGTTGGGGACCAAGGTGTAGCTGCAGTTGGGAAATTCTGTAAACAACTTGAAGATGTAAATCTGCGTTTTTGTGAAGGGTTGACTGATACTGGTTTGGTTGCATTAGCCCATGGTTGTGGGAAATCATTGAAAGCATTTGGTATTGCAGCTTGCGCCAAAATAACGGATGTCTCATTAGAAGCTGTGGGTATGCACTGCACATATCTTGAGACCTTGTCGCTAGATTCAGAATTTATCCACAACAAAGGGGTGCTGTCTGTAGCTCAAGGCTGCCCACATCTGAAAGTTTTGAAGCTACAATGTACGAATGTCACAGACGAAGCATTGGTAGCTGTAGGCTCCTTATGTCCTTCTCTGGAACTATTGGCTTTATACAGCTTTCAAGAATTTACTGACAAGGGTTTATGTGCCATTGGAATAGGCTGCAAGAAGTTAAAAAATCTCACTCTAAGTGATTGCTATTTCCTGAGCGATATGGGCTTGGAAGCTGTTGCAGCTGGTTGTAAAGAACTAACACATCTTGAAGTGAACGGCTGCCACAACATTGGAACCATGGGACTTGAATCCATCGCAAGATCTTGCATCCAACTCACGGAATTGGCTTTGTTGTACTGCCAAAAGATTGCTAACTCCGGTCTTCTTGGAGTTGGTCAAAGTTGCAAGTTCTTACAAGCGCTTCACTTGGTAGATTGTTCAAAAATTGGAGATGAAGCAATATGTGGCATAGCCAAAGGATGCACAAATTTGAAGAAACTCCATATTCGTCGATGTTATGAGATTGGGAATGCAGGAATCATAGCTATTGGCGAGAATTGCAAATTCCTCACGGATTTGAGCCTCAGATTTTGTGATAGGGTTGGTGATGAGGCACTTATTGCCATTGGTAAGAGTTGTTCCCTACATCAGCTGAATGTTAGTGGGTGCCATCGTATTGGTGACGAGGGAATTGCAGCCATTGCTAGAGGTTGTCCCCAATTGAGTTACTTAGATGTAAGCGTTCTCGAGAACTTAGGTGATATGGCAATGGCTGAGTTAGGGGAAGGCTGTCCCTTGCTCAAGGACGTGGTATTGTCTCACTGTCACCAGATAACCGATGCGGGTATAATGCATTTAGTGAAGTGGTGCACAATGCTCGAATCCTGTCACATGGTCTACTGTCCTGGTATTTCCGCAGCTGGGGTCGCCACTGTCGTTTCTAGCTGCCCCAGCATAAAGAAAATCCTTGTCGAGAAATGGAAGTATTTTAGGCCCCAAAGACTCTCATGCCTTTCTTGGTTGGACCAACTCAACCGGCGATTGATTTCCTACAAGTCAGTCTTCCTGAATTTGTCGAGCAAGAAGCGGATCGCATACCTCTATCGTCTTATTGTTCTATTTTTATTGAGCATCCGTCGTGGAGAAGAAGCCATGCCTGATGGTTGCAGCATCAGAGCCATTTGGATCTTCAGCAACTTCGACGCTGTTATTTTCTCCAGGAGGTTTCCAGTGGTAGAGAGGAGGTGGCGTACTACATGCAAGACCGAGAATGATAGATGTAATTCAGACGACCTCACATCTAGCGTATCTCCAGTACTTCCTAATGATTCCGAGTTAGCTACTGCATTTGTGGAGAGAAAGAAGAGAGAGGGATCTGCCCGTGGGTTTGGCATTCGTGTTATTCAGTCATCTGAGGGAAGTGATTCTTGGGTTGATGACCCTATTACAAGGCATATCATTGGACTTCATGTGAAGAAAGAAGAAGGGAGCAGTATCTTTATATGGCCACTAATATTGAACATAAAGAGTCATTATTCCATTCTTGTGTTGCCGTTAGTTGAACCACAGCACATTAAACATTATGCAAGTTTGTGCAGAAGATCTGATTGTGGAAGTGCTATTGGAGCAGAAAGTTCCTTATCTTCCCTCCTGCTTGATCTTCCTTCCATCACAGGGGCATTCATGGTTGCACTTGCTATTGGTGATGTAATCACTGGTGACGTGGTTGAACCTGATGTCCTCGTCAGTGCATCTCCATCTGTGGGAGGCTTATTGGATTCATTAACAGGCAGCATAGGAATATCAGGAATCTCTGCTAGGGCAAAACCTGTAGCGTCTCCCAGCACATCTGCCACTCCTTCTAGCAATACTGTGGCAGGAACTCTTAATTCAGATGTGCCTAGGCCTTTGGATAAAGATGCACTGAGATCTTTCATAAGCAGTTCAATGCCCTTTGGTACACCCTTGGATCTAAGCTATACCAATATATTTTCTATCAAAGTAAATGGTTTTTCTTCATCAGACCCGCCTCCTGCTGATGTTAAACAACCAGCATGGAAGCCATATCTCTATAAAGGGAAGCAGAGAGTGATGCTTACGATTCATGAAATCATTAATGCAGCTATGTATGACAGGGATGAGATTCCAGATAAAATATCAGTTTCTGGTCAAATAAATTGTCGAGCTGAATTAGAAGGGTTGCCTGATGTTTCCTTCCCCTTAGCAGGTTCGAATAAGGCTTGTATTGAGGGCTTATCATTCCATCCTTGTGCCCAAGTTCCTGAACATGGCATAGATAAGCAAGCTGTGATGTTTTCTCCCCCACTCGGTAATTTTGTTTTAATGCGTTATCAGGCAATATGTGCTTCTGGGCCTCCTGTTAAAGGATTTTACCAATTATCCATGGTCTCTGAGGATAAAGGTGCTTTTTTGTTCAAGTTGTGTTTGATGGAAGGTTATAAAGCTCCTCTGTGTATGGAATTCTGTACTGTGACTATGCCTTTCCCTAGAAGGAGGATTGTATCTTTCGATGGAACTCCTTCAATTGGAACAGTTTCTACTACCGAACATTCAGTTGAGTGGAAAATTTTAGCAAGTGGACGAGGGCTGTTGGGAAAAAGTATTGAGGCAACTTTTCCTGGAACAATTAGGTTTGCACCCTGGCAAATTCAAAGATTGCATTCTTCAAGTTCTGTCGCTACTAGCGTAGAAGAGGTAGATAGTGATGTCGAGGCTGAAAGTGCAAGCAATGTGGTCAACATTGAGGAATTTTTAATGGAGAAAATGAGTAAGGATCTTCCTCCAGTGGAACTAGAGGAGCCATTTTGCTGGCAGGCGTACAATTATGCGAAGGTATCGTTCAAGGTTTTAGGGGCATCAATATCAGGAATATCTGTCGATCCTAAATCTGTTAGCATTTATCCAGCTGTTAAAGCTCCTGTTGAATTTTCAACCCAGGTAACTTCGGGGGATTACATCTTGTGGAACACCTTGGATAAGTGCCCGTCTACTTGTCACACCGGACAACGAACAATTCCCCGTAGCAGAATTCTGCAGATATATCCTTCCGAAAAATATGCTCTTGAAAAAGAGATGTCCCAATTCATCGCCGGAGTTGGGCTGAAAGCAGGCGTCGACGATCCAATTAGATTCACGGTGAAATTGTGTGCACCTGCTTGTCCCAATCTCATTATCAGTGCATGCAGAGGAACTTTTTGGTACTCTCTAATTGCACTTGTCTGCCTGGATGGTCATCTGATGCCCCTCACAATCAGACTCTCTGGCTTTCTTAAGAGGACAGAGGGTTTGGAACAGAGGGAACATGATGCCCTCCATGCTTACAACTCCATGCCTTACTCTCTCTCTTACAAGATGGGGCTGGGGGAAGCTTCTCTCTCTCTCTAG 4167 44.54 MRGHDWINTALPDELIVEIFRCLDSKLSRDACSLVCRRWLKLERLSRTTLRIGATGSPDLFVQLLARRFVNVRNVHIDERLAISFSLHPRRRRRKEAMRLPYHATDNTGAEGALESSCLSDAGLFALSVGFPNLEKLSLIWCSNISSHGLTTLAEKCKFLKSLDLQGCYVGDQGVAAVGKFCKQLEDVNLRFCEGLTDTGLVALAHGCGKSLKAFGIAACAKITDVSLEAVGMHCTYLETLSLDSEFIHNKGVLSVAQGCPHLKVLKLQCTNVTDEALVAVGSLCPSLELLALYSFQEFTDKGLCAIGIGCKKLKNLTLSDCYFLSDMGLEAVAAGCKELTHLEVNGCHNIGTMGLESIARSCIQLTELALLYCQKIANSGLLGVGQSCKFLQALHLVDCSKIGDEAICGIAKGCTNLKKLHIRRCYEIGNAGIIAIGENCKFLTDLSLRFCDRVGDEALIAIGKSCSLHQLNVSGCHRIGDEGIAAIARGCPQLSYLDVSVLENLGDMAMAELGEGCPLLKDVVLSHCHQITDAGIMHLVKWCTMLESCHMVYCPGISAAGVATVVSSCPSIKKILVEKWKYFRPQRLSCLSWLDQLNRRLISYKSVFLNLSSKKRIAYLYRLIVLFLLSIRRGEEAMPDGCSIRAIWIFSNFDAVIFSRRFPVVERRWRTTCKTENDRCNSDDLTSSVSPVLPNDSELATAFVERKKREGSARGFGIRVIQSSEGSDSWVDDPITRHIIGLHVKKEEGSSIFIWPLILNIKSHYSILVLPLVEPQHIKHYASLCRRSDCGSAIGAESSLSSLLLDLPSITGAFMVALAIGDVITGDVVEPDVLVSASPSVGGLLDSLTGSIGISGISARAKPVASPSTSATPSSNTVAGTLNSDVPRPLDKDALRSFISSSMPFGTPLDLSYTNIFSIKVNGFSSSDPPPADVKQPAWKPYLYKGKQRVMLTIHEIINAAMYDRDEIPDKISVSGQINCRAELEGLPDVSFPLAGSNKACIEGLSFHPCAQVPEHGIDKQAVMFSPPLGNFVLMRYQAICASGPPVKGFYQLSMVSEDKGAFLFKLCLMEGYKAPLCMEFCTVTMPFPRRRIVSFDGTPSIGTVSTTEHSVEWKILASGRGLLGKSIEATFPGTIRFAPWQIQRLHSSSSVATSVEEVDSDVEAESASNVVNIEEFLMEKMSKDLPPVELEEPFCWQAYNYAKVSFKVLGASISGISVDPKSVSIYPAVKAPVEFSTQVTSGDYILWNTLDKCPSTCHTGQRTIPRSRILQIYPSEKYALEKEMSQFIAGVGLKAGVDDPIRFTVKLCAPACPNLIISACRGTFWYSLIALVCLDGHLMPLTIRLSGFLKRTEGLEQREHDALHAYNSMPYSLSYKMGLGEASLSL 1388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6307729 6324213 - CePI673135_06g005700.1 Cec06g0570 205307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0570 1388 CDD AP_MuD_MHD 938 1256 - -
Cec06g0570 1388 Gene3D Ribonuclease Inhibitor 349 616 IPR032675 -
Cec06g0570 1388 Gene3D Ribonuclease Inhibitor 114 348 IPR032675 -
Cec06g0570 1388 Pfam Adaptor complexes medium subunit family 939 1228 IPR028565 -
Cec06g0570 1388 Pfam F-box 9 48 IPR041567 -
Cec06g0570 1388 FunFam F-box/LRR-repeat protein 4 8 47 - -
Cec06g0570 1388 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 938 1249 IPR036168 -
Cec06g0570 1388 FunFam Adaptor complexes medium subunit family protein 951 1045 - -
Cec06g0570 1388 CDD F-box_AtTIR1-like 10 47 - -
Cec06g0570 1388 Pfam Leucine Rich repeat 185 205 IPR001611 GO:0005515(InterPro)
Cec06g0570 1388 Pfam Leucine Rich repeat 415 437 IPR001611 GO:0005515(InterPro)
Cec06g0570 1388 Pfam Leucine Rich repeat 518 538 IPR001611 GO:0005515(InterPro)
Cec06g0570 1388 Pfam Leucine Rich repeat 156 178 IPR001611 GO:0005515(InterPro)
Cec06g0570 1388 Pfam Leucine Rich repeat 465 489 IPR001611 GO:0005515(InterPro)
Cec06g0570 1388 Pfam Leucine Rich repeat 441 463 IPR001611 GO:0005515(InterPro)
Cec06g0570 1388 Pfam Leucine Rich repeat 260 281 IPR001611 GO:0005515(InterPro)
Cec06g0570 1388 SUPERFAMILY F-box domain 10 42 IPR036047 GO:0005515(InterPro)
Cec06g0570 1388 SUPERFAMILY RNI-like 117 354 - -
Cec06g0570 1388 ProSiteProfiles Mu homology domain (MHD) profile. 948 1211 IPR028565 -
Cec06g0570 1388 MobiDBLite consensus disorder prediction 864 884 - -
Cec06g0570 1388 Gene3D - 6 47 - -
Cec06g0570 1388 SUPERFAMILY RNI-like 334 582 - -
Cec06g0570 1388 SMART LRR_RI_2 466 494 - -
Cec06g0570 1388 SMART LRR_RI_2 260 290 - -
Cec06g0570 1388 SMART LRR_RI_2 157 187 - -
Cec06g0570 1388 FunFam F-box/LRR-repeat protein 4 114 352 - -
Cec06g0570 1388 Gene3D Mu homology domain, subdomain B 939 1067 - -
Cec06g0570 1388 FunFam AP-5 complex subunit mu isoform X1 1046 1133 - -
Cec06g0570 1388 PANTHER AP-5 COMPLEX SUBUNIT MU-1 643 1259 IPR039591 GO:0005764(PANTHER)|GO:0005770(PANTHER)|GO:0005829(PANTHER)|GO:0016197(PANTHER)|GO:0030119(PANTHER)
Cec06g0570 1388 SMART LRR_CC_2 518 543 IPR006553 -
Cec06g0570 1388 SMART LRR_CC_2 260 284 IPR006553 -
Cec06g0570 1388 SMART LRR_CC_2 389 414 IPR006553 -
Cec06g0570 1388 SMART LRR_CC_2 415 440 IPR006553 -
Cec06g0570 1388 SMART LRR_CC_2 157 181 IPR006553 -
Cec06g0570 1388 SMART LRR_CC_2 363 388 IPR006553 -
Cec06g0570 1388 SMART LRR_CC_2 337 362 IPR006553 -
Cec06g0570 1388 SMART LRR_CC_2 441 466 IPR006553 -
Cec06g0570 1388 SMART LRR_CC_2 235 259 IPR006553 -
Cec06g0570 1388 SMART LRR_CC_2 311 336 IPR006553 -
Cec06g0570 1388 SMART LRR_CC_2 182 207 IPR006553 -
Cec06g0570 1388 SMART LRR_CC_2 492 517 IPR006553 -
Cec06g0570 1388 SMART LRR_CC_2 544 569 IPR006553 -
Cec06g0570 1388 SMART LRR_CC_2 131 156 IPR006553 -
Cec06g0570 1388 SMART LRR_CC_2 467 491 IPR006553 -
Cec06g0570 1388 SMART LRR_CC_2 285 310 IPR006553 -
Cec06g0570 1388 SMART LRR_CC_2 209 234 IPR006553 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0570 K19023 - - csv:101206253 1118.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2244 Cec-Chr5:33901309 Cec06g0570 Cec-Chr6:6307729 2.50E-14 dispersed
Cec06g0570 Cec-Chr6:6307729 Cec07g1791 Cec-Chr7:33589631 4.20E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007087 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 35