Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec06g0607 | ATGGTTCTCATTCCCTTTCCTTGTTCAAGACAGTGCTTTGCAAGTACAGTAGGAAGACATGTATTCAATTGGCGAACGGATGGTTATACAAAAAAAAGGCTCACTTCTGGAAGTATTGGGCCATATGATGAAAAATCCAAGATTTTTCTTGTCGTCCATCTACAAAATGGGATGGACAGAGCAAAAAACATGTGGTCTCGTCTTCCGAACACCGACGAAAATGAGGATGACCTTGTTAGTATCTTGAAGAAGAACGATGGGGGTGGCGTCGAAAGCCTTGATTATGAGGTCATCGAGAATTATGCTTACTGGGATGAGCAGGCGCAAAGAGGGAAATTATTTGTTGGCTATAGCGTGGCAGTTAAGTGGCTGTATGCTTTGTTCATAGGCATTGGCACAGGATTGGCTGCAGTTTTCATTAATATGGCTGTTGAGAACTTTGCTGGCTGGAAATTTTCATTGACATTTGCCCTAATTCAAAAGTCATATATGGCTGGCTTTATAGTATACTTAGCAATCAACTTGGGTCTAGTGTTTTCATCTGTATATATAGTCACACACTTTGCTCCTGCAGCAGCTGGATCTGGCATACCTGAAATCAAGGGCTATTTGAATGGAATTGACATACACGGTGTCCTTTTCTTCAGAACCTTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTGGCTTTAGGCAAAGAAGGGCCTCTTGTACATACAGGCGCCTGCATTGCTTCTTTGTTAGGACAAGGTGGATCTGCTAAATATCATCTAAATTCCAGGTGGTTACAAGTGTTCAAGAGTGACCGGGATCGTCGTGATCTTGTAACCTGTGGGTGTGCAGCAGGAGTTGCTGCAGCTTTTAGAGCTCCAGTTGGTGGTGTATTATTTGCACTGGAAGAAGTAACATCTTGGTGGAAGAGTCAACTTTTGTGGCGTGTGTTTTTCACTTCTGCTGTGGTGGCTGTTGTGGTGCGGGCAGCTATGGGATGGTGTAAGAGTGGGAAGTGTGGACATTTTGGTTCTGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGACTATTCTTTTGGGGAGTTGTTGCCCATGACTGTGATTGGGGTTATTGGAGGCTTATTAGGAGCATTATTCAACCAGCTTACTCTTTACATTACTTATTGGCGACGAAACCATTTGCACAAGAAAGGGAACCGAGTCAAGATCATTGAGGCTTGTCTCATCTCAGTATTGACATCAATTATTTCCTTTGGACTACCACTTCTAAGGCAATGTACTCCATGCCCCAAACCTGATCCTGAATTAGGAAATGAATGCCCAAGGCCTCCAGGAACATATGGGAATTATGTTAATTTTTATTGCAGTAAGGACAATGAATACAATGACCTTGCAACCATCTTCTTTAACACCCAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATGCATGAATTCAGTGCGCGGAGTTTATTGACCTTTCTGGTTATGTTTTATACTTTAGCTGTCGTGACATTTGGCACTGCAGTTCCTGCTGGTCAATTTGTTCCTGGTATAATGATTGGATCTACGTATGGACGTTTGGTTGGAAAGTTTGTTGTTAGTTTCTACAAGAAGCCCAACATTGAAGAGGGAACATATGCCTTGTTGGGTGCTGCATCCTTTCTGGGAGGCTCTATGCGAATGACAGTGTCTCTCTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAATTTTTACCACTCATCATGCTTGTACTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAGTTGAGGGGTATTCCATTACTGGAATCAAGACCAAAGTACCAGATGCGGAAAATTACAGCAAAGGAAGCGTGTGGAAAAAGGGTTGTCTCCTTCCCCCGTGTTGTTAAGGTTGCTGATGTTGTTAGTATTTTACGGAGCAACCGACATAATGGCTTTCCTGTGATTGATTACTCTCGAAATGGAGAAACGCGTGTCATTGGACTAATGCTTAGAAGTTACTTATTAGGACTTCTGCAGTCCAAAGTAGATTTTCAGCACAGTCCCGTGCCTTCTGATCCAAGAGGATCTATATCAAGCAGGCACAATTTCAGTGAATTTGTGAAACCTGCTTCCAGTAAAGGAATTTCAATTGATGATATAAATCTTAGTTCAGAGGACTTGGAAATGTACATCGATCTACTTCCATATCTGAATCCATCTCCATATATTGTCCCAGAGGATATGTCTCTGACAAAGGTCTATAATCTTTTCCGGCAACTAGGTCTGAGACACGCATTTGTTGTTCCCCGTCCATCAAATGTGGTTGGTTTGATTACTCGAAAGGATTTGTTGATAGAGGATAGCGAAGATTCGGATGCAATGGAACTACAATCGACTAGTGTAAGAGCTCGTCGTCCAGATAGAAGAGTACATACAAGGAATGGGGATGTAGAGAGCCCACTTCTTAATGGACTTCTGGTCAATAACCCAGATGGCTAA | 2538 | 42.32 | MVLIPFPCSRQCFASTVGRHVFNWRTDGYTKKRLTSGSIGPYDEKSKIFLVVHLQNGMDRAKNMWSRLPNTDENEDDLVSILKKNDGGGVESLDYEVIENYAYWDEQAQRGKLFVGYSVAVKWLYALFIGIGTGLAAVFINMAVENFAGWKFSLTFALIQKSYMAGFIVYLAINLGLVFSSVYIVTHFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSAKYHLNSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWKSQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFGELLPMTVIGVIGGLLGALFNQLTLYITYWRRNHLHKKGNRVKIIEACLISVLTSIISFGLPLLRQCTPCPKPDPELGNECPRPPGTYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTMHEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLRGIPLLESRPKYQMRKITAKEACGKRVVSFPRVVKVADVVSILRSNRHNGFPVIDYSRNGETRVIGLMLRSYLLGLLQSKVDFQHSPVPSDPRGSISSRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPYLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPSNVVGLITRKDLLIEDSEDSDAMELQSTSVRARRPDRRVHTRNGDVESPLLNGLLVNNPDG | 845 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 6763703 | 6774326 | + | CePI673135_06g006070.1 | Cec06g0607 | 205344 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec06g0607 | 845 | FunFam | Chloride channel protein | 708 | 799 | - | - | |
| Cec06g0607 | 845 | Pfam | CBS domain | 751 | 798 | IPR000644 | - | |
| Cec06g0607 | 845 | SUPERFAMILY | CBS-domain pair | 625 | 797 | IPR046342 | - | |
| Cec06g0607 | 845 | ProSiteProfiles | CBS domain profile. | 750 | 806 | IPR000644 | - | |
| Cec06g0607 | 845 | SMART | cbs_1 | 753 | 801 | IPR000644 | - | |
| Cec06g0607 | 845 | SMART | cbs_1 | 640 | 692 | IPR000644 | - | |
| Cec06g0607 | 845 | FunFam | Chloride channel ClC3 | 114 | 431 | - | - | |
| Cec06g0607 | 845 | PRINTS | Chloride channel signature | 516 | 536 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cec06g0607 | 845 | PRINTS | Chloride channel signature | 190 | 207 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cec06g0607 | 845 | PRINTS | Chloride channel signature | 607 | 621 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cec06g0607 | 845 | PRINTS | Chloride channel signature | 285 | 304 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cec06g0607 | 845 | PRINTS | Chloride channel signature | 551 | 567 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cec06g0607 | 845 | PRINTS | Chloride channel signature | 569 | 588 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cec06g0607 | 845 | PRINTS | Chloride channel signature | 221 | 240 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cec06g0607 | 845 | MobiDBLite | consensus disorder prediction | 814 | 828 | - | - | |
| Cec06g0607 | 845 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 641 | 797 | - | - | |
| Cec06g0607 | 845 | PRINTS | Plant CLC chloride channel signature | 338 | 345 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cec06g0607 | 845 | PRINTS | Plant CLC chloride channel signature | 306 | 314 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cec06g0607 | 845 | PRINTS | Plant CLC chloride channel signature | 468 | 484 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cec06g0607 | 845 | PRINTS | Plant CLC chloride channel signature | 96 | 104 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cec06g0607 | 845 | PRINTS | Plant CLC chloride channel signature | 320 | 330 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cec06g0607 | 845 | Gene3D | Clc chloride channel | 117 | 621 | - | - | |
| Cec06g0607 | 845 | MobiDBLite | consensus disorder prediction | 808 | 836 | - | - | |
| Cec06g0607 | 845 | ProSiteProfiles | CBS domain profile. | 637 | 697 | IPR000644 | - | |
| Cec06g0607 | 845 | CDD | ClC_6_like | 91 | 620 | - | - | |
| Cec06g0607 | 845 | Pfam | Voltage gated chloride channel | 178 | 600 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cec06g0607 | 845 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 74 | 807 | IPR051280 | GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Cec06g0607 | 845 | SUPERFAMILY | Clc chloride channel | 100 | 622 | IPR014743 | - | |
| Cec06g0607 | 845 | Gene3D | - | 622 | 804 | IPR046342 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec06g0607 | Cec-Chr6:6763703 | Cec10g0713 | Cec-Chr10:10070577 | 1.10E-184 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec06g0607 | K05016 | - | csv:101215989 | 1519.98 |