Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0621 ATGGCACAACTTCTCTACTTCCTCCCACTCATCATTTATCTTTTCTCCGCCGTCCCCGTCGCCGCCGACCGCCACCCTCTCGACCCACTCTCTCCGCCCGAGTTCGAACTCATCCGATCACTCATAATCAATTCCAACCCCTCCACCAACTTCACCTTCCAGTACGTCGCCCTCGCCGACCCCACCAAGCAATCCGTCCTTTCATGGCTCTCAAACCCCAAAACTCCGCCGCCGCCCCGCCGCGCCATCGCCACCGTCCGTTTCAACAAAGCCACACACGAGATCCTCATAGACCTACACAAAAAAACCATAATATCGAACCGGGTCTACTCCGGTCCGGGGTACGCGCCGTACACATTCGAGGAGCAGTTCGCGGCCGCCGCTCTGCCGCCGTCCCACCCGCCGTTCGTGGCGGCGATGAAAAAAAGAGGGCTGAAAATGGAAGAGGTGGTTTGTGCGTGTTTTAGCGTCGGATGGTTTGGGGAAAAAAGGAAAGTGGAGAAGAGGATTGTGAAAGTGCAGTGCTATTATTTGGATGGGAGTGTGAATCTGTACATGAGGCCTGTGGAAGGAGTGACGGTGAACGTTGATCTTGATGAGATGAAGATTATTGGGTTTCGTGATAGATATGTGGTTCCAATTCCCAAGGCGGACGGGACTGAGTACAGAGAATCAAAGCTCAATCCGCCGTTTTTGCCGCCTTTGAACGGAATTAAGATGCTGCAGCCCGACGGCCCTAGCTTCAAAGTCAATGCCCACTCCATTAGTTGGGCGAACTGGAATTTACACGTAAGCTTGGATGAGAGAGCAGGGCCAATGATATCGCTAGCATCCATCTATGACATGGAAAAGAAAGAACACCGGCAAGTAATGTACAGAGGGTTCATATCGGAGCTGTTCGTGCCGTACATGGATTTAAACGAAGAATGGTACTACCGGACGTTTTTCGACGCCGGCGAGTACGGCTTCGGCCAATGTGCAGTGCCGTTACAGCCGCTGAGAGACTGCCCGGAAAATGCGGTGTTTATGGACACGTACATGGCCGCCGGAGATGGCAGGCCGGTGAAGATGCCCAACACTTTTTGTATATTTGAGCGCCACGCCGGTGATATCATGTGGCGCCACACGGAGGGCACCATTCCGAATACGCTTATTAGTGAGACGAGGGCGGAAGTGAGCTTAGTGGTGAGGATGGTGGCAGCTGTGGGCAACTATGACTACATTGTAGACTGGGAATTTAAGCAGAGTGGCTCCATTATTGCTAATGTTGGGTTAACTGGTTTGCTAGAAGTTAGGGCATCAAAGTACACTCACAATGACCAAATAAAGGAGGAAGTCTACGGCCCTTTGTTAGCCGAGAATACGATCGGCGTCCGCCATGATCACTTCCTCATCTACCATCTCGATCTCGACATCGACGGCGGCGCCAACTCCTTCGTCAAATCCAACCTCCGCACTGTCCGATCGCCGAACCCGGATTCCCCTAGGCGTAGCTATTGGACGGTCGTCGCCGAGACGGCCAAAACAGAGGCCGATGCGAGGATCAAATTCGGCCTCCAGGAGGCCGAATTGGCAGTCGTTAATCCCAATCGGAGGACCAGAATGGGGAATCCCGTCGGATACCGTCTGATTCCGAAGTCGGCGGCGGGTCCTCTTTTGAGTGCTGATGATTACCCCCAAATTAGGGGAGCGTTCTCCAAGTACAATGTGTGGGTTACACCGTATAACAGCTCCGAGAAATGGGCTTCTGGACTCTTCACTGATCAGAGCCGTGGAGACGATACCTTGGCTACTTGGAGTCTCAGGGACAGGGAGATAGAGAACAAGGACATAGTCATGTGTCACCCCACCCCAGTCCTTCACCATCATTTCTGTACGGCGGCGCCGCCCTTTTTCCATCCGCTTGACCCTCTAAACCCGGTGGAGCTTGACCAAATTAGGCTCGCAGTACAGAAATCCCACCTTGGAAAGCTTCCAAATCTCACATTTCACTTCGTTGACTTAGAAGAACCAGATAAGAAGGATGTTCTTTCCTGGCTTTCTTCCGGTGAAGAAAACAACCCCCTCCACCGCCCGCCCCGCCATGCCAAGGTTGTGGTCCGGGCGGCGGATTCCACCCACGAGCTACTTGTAGACCTTGCCACACGCTCGGTTAAGTCTGACCAAGTCTATAGTGGCCATGGCTATCCTCCTCTCACTTTTGTGGAGCTTGTCCAAGCCAGCAAATTGCCTCTCAATTTCCCCAAATTCAAGGATTCCATTCAGAGGAGAGGCTTGAACTTGTCTCATGTTTCTTGCATCCCGTTTACAGTAGGCTGGTACGGCGAAAAAACAACCAAAAGGCTTCTAAAAGTTGCGTGCTTTTACAGAGAAGGAACCATCAATGTGTTCTCCAGGCCAATTGAAGGCATCATCACACTAATCGACGTTGATTCCATGAAAATCATCAACTACTCTGACAGATTCACCGCCCCTTTGCCGCAATCAGAAGGCACCGATTACCAATCAAAGAAAACAGAGCCCAAATCTTCCAATTGCAAGGCGGCGAAAAGAAGATTCACCATCGAAGGCCATCAAGTGAAATGGGAAAACTGGGTCTTCCATGTGGGATTCAACGCCAGAGCCGGAATTATTATCTCAACAGCCTCCATTTTCGACGATGAAAAGAAGAAATTCAGACGAGTGCTTTACAGAGGACACATTTCAGAGACGTTTGTGCCATATATGGATCCGACGAACGAATGGTACTTCAGAACCTTTATGGACATCGGAGAGTTTGGATTTGGGCGGGCGGCGGACACTCTGCAGCCGCTGGTTGACTGTCCGGAAACTGCCGAGTATCTAGACGGCTACATGGCCGGCGCCGACGGGCGAGCGCAGAAAGTATCGAGAGCCATTTGTATCTTTGAACGCCATTCAGGAGATGTTTTATGGAGGCATACCGAGATTAATATTCCTGGAAAAGTGATTAGACGTGGGGAACCTGAGATTAGTTTGGTGGTTAGGATGGTGGCAACTGTTGGGAATTATGATTATGTTCTTGACTGGGAATTCAAAAGAAGTGGCTCTATTAAAATGGGGGTTGCTTTAACAGGGCTTTTGGAGGTTAAAGCCACACCGTACAGAAATACCATGGATGTAACCCAACAAACATACGGAACTTTAATCGCCGACAACACAATCGCCGTCAACCACGACCACTACCTAACCTACTACCTCGACCTCGACGTTGACGGCACCGCCAACTCCTTCGTCAAAGCCAAGCTGATAACGGCAACAACGGCGAACGTCAACGCCACGTCACCCAGGAAAAGTTACTGGAAAATTATCCGAGAAACCATTGAAACCGAAACTGAAGCTAAACTTCAGCTCAGCTCCCGCCCAGCTGAGCTCTTGTTCGTAAACCCCAATAAGAAGACAAAGATTGGGAATCCGGTTGGTTACCGGCTCATCACCGGCCAACCGGTTAATTCTTTATTGGCCGACGATGATTACCCTCAGATCAGAGCGGCTTACACCAAGTACCCGTTGTGGGTGACTCCTTATAACAAGTCCGAGAGATGGCCGGCCGGATTTTACGCCGATCGGAGCCGTGGTGATGATGGCTTAGCCCTCTGGGCCAAAAGGAATAGAAGAATTGATAATAGAGATATAGTTTTATGGTACACGGTGGGTTTCCATCACAGCCCTTGCCAGGAAGAATTCCCGGCAATGGCCGCCCTCCACGGCGGCTTCGAGCTCCGACCAGCCAATTATTTTGATAGAAACCCTATCCTTAAATGA 3783 50.91 MAQLLYFLPLIIYLFSAVPVAADRHPLDPLSPPEFELIRSLIINSNPSTNFTFQYVALADPTKQSVLSWLSNPKTPPPPRRAIATVRFNKATHEILIDLHKKTIISNRVYSGPGYAPYTFEEQFAAAALPPSHPPFVAAMKKRGLKMEEVVCACFSVGWFGEKRKVEKRIVKVQCYYLDGSVNLYMRPVEGVTVNVDLDEMKIIGFRDRYVVPIPKADGTEYRESKLNPPFLPPLNGIKMLQPDGPSFKVNAHSISWANWNLHVSLDERAGPMISLASIYDMEKKEHRQVMYRGFISELFVPYMDLNEEWYYRTFFDAGEYGFGQCAVPLQPLRDCPENAVFMDTYMAAGDGRPVKMPNTFCIFERHAGDIMWRHTEGTIPNTLISETRAEVSLVVRMVAAVGNYDYIVDWEFKQSGSIIANVGLTGLLEVRASKYTHNDQIKEEVYGPLLAENTIGVRHDHFLIYHLDLDIDGGANSFVKSNLRTVRSPNPDSPRRSYWTVVAETAKTEADARIKFGLQEAELAVVNPNRRTRMGNPVGYRLIPKSAAGPLLSADDYPQIRGAFSKYNVWVTPYNSSEKWASGLFTDQSRGDDTLATWSLRDREIENKDIVMCHPTPVLHHHFCTAAPPFFHPLDPLNPVELDQIRLAVQKSHLGKLPNLTFHFVDLEEPDKKDVLSWLSSGEENNPLHRPPRHAKVVVRAADSTHELLVDLATRSVKSDQVYSGHGYPPLTFVELVQASKLPLNFPKFKDSIQRRGLNLSHVSCIPFTVGWYGEKTTKRLLKVACFYREGTINVFSRPIEGIITLIDVDSMKIINYSDRFTAPLPQSEGTDYQSKKTEPKSSNCKAAKRRFTIEGHQVKWENWVFHVGFNARAGIIISTASIFDDEKKKFRRVLYRGHISETFVPYMDPTNEWYFRTFMDIGEFGFGRAADTLQPLVDCPETAEYLDGYMAGADGRAQKVSRAICIFERHSGDVLWRHTEINIPGKVIRRGEPEISLVVRMVATVGNYDYVLDWEFKRSGSIKMGVALTGLLEVKATPYRNTMDVTQQTYGTLIADNTIAVNHDHYLTYYLDLDVDGTANSFVKAKLITATTANVNATSPRKSYWKIIRETIETETEAKLQLSSRPAELLFVNPNKKTKIGNPVGYRLITGQPVNSLLADDDYPQIRAAYTKYPLWVTPYNKSERWPAGFYADRSRGDDGLALWAKRNRRIDNRDIVLWYTVGFHHSPCQEEFPAMAALHGGFELRPANYFDRNPILK 1260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6972197 6984928 - CePI673135_06g006210.1 Cec06g0621 205358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0621 1260 FunFam Amine oxidase 631 730 - -
Cec06g0621 1260 Gene3D - 732 824 - -
Cec06g0621 1260 Gene3D - 118 213 - -
Cec06g0621 1260 SUPERFAMILY Amine oxidase N-terminal region 114 223 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cec06g0621 1260 SUPERFAMILY Amine oxidase N-terminal region 728 834 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cec06g0621 1260 Pfam Copper amine oxidase, N3 domain 730 822 IPR015802 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cec06g0621 1260 Pfam Copper amine oxidase, N3 domain 118 214 IPR015802 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cec06g0621 1260 SUPERFAMILY Amine oxidase N-terminal region 24 112 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cec06g0621 1260 ProSitePatterns Copper amine oxidase topaquinone signature. 999 1012 IPR049948 -
Cec06g0621 1260 SUPERFAMILY Amine oxidase catalytic domain 226 637 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cec06g0621 1260 Gene3D Copper amine oxidase, catalytic domain 853 1260 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cec06g0621 1260 Gene3D Copper amine oxidase, catalytic domain 248 630 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cec06g0621 1260 PANTHER COPPER AMINE OXIDASE 632 1260 IPR000269 GO:0005507(PANTHER)|GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0008131(PANTHER)|GO:0009308(InterPro)|GO:0009308(PANTHER)|GO:0048038(InterPro)
Cec06g0621 1260 Pfam Copper amine oxidase, N2 domain 25 109 IPR015800 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cec06g0621 1260 Pfam Copper amine oxidase, N2 domain 633 722 IPR015800 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cec06g0621 1260 SUPERFAMILY Amine oxidase catalytic domain 850 1259 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cec06g0621 1260 FunFam Amine oxidase 731 824 - -
Cec06g0621 1260 Pfam Copper amine oxidase, enzyme domain 851 1258 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cec06g0621 1260 Pfam Copper amine oxidase, enzyme domain 239 621 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cec06g0621 1260 FunFam Amine oxidase 248 632 - -
Cec06g0621 1260 FunFam Amine oxidase 853 1260 - -
Cec06g0621 1260 FunFam Amine oxidase 118 212 - -
Cec06g0621 1260 Gene3D - 632 730 - -
Cec06g0621 1260 Gene3D - 23 116 - -
Cec06g0621 1260 SUPERFAMILY Amine oxidase N-terminal region 631 727 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0621 K00276 - - csv:101222232 1215.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0617 Cec-Chr6:6925483 Cec06g0621 Cec-Chr6:6972197 2.90E-193 dispersed
Cec06g0621 Cec-Chr6:6972197 Cec06g1927 Cec-Chr6:32655565 1.00E-61 dispersed
Cec06g0620 Cec-Chr6:6961800 Cec06g0621 Cec-Chr6:6972197 2.70E-199 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g486 . . Bda03g00890 . Bpe04g00834 . Bma04g00786 . Cmo08g01122 Cmo17g00225 . . . . . . . . . . . . . . Cla06g00581 Cam06g0619 Cec06g0621 Cco06g0627 Clacu06g0606 Cmu06g0599 Cre06g1367 . . . Cone4ag0238 . . . . . . . . . . . . Sed01g3969 . . Cma08g01145 Cma17g00239 Car08g01028 Car17g00217 Cpe12g00201 . Bhi12g01713 Tan06g2525 Cmetu01g1582 Lac12g2283 Hepe03g0194 . Lcy13g0279 . . . . . . . Lsi09g01323 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97