Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0623 ATGGAGGACGGTGTGAGATCTGGGGGTCCGTCGGGGGTTTTGGTGAAGACTAGGAACTCGTCTGGTTGCTTAATTGTTAGAAAAAAAGAGGATGGATTAGGAGGCGCCGGTTCTTCGGGCTCACGCTTGCTTAATGCAAAGAAGGAGAAGAAGAGGCCTAGGTTGGTTTTGAGTGATTCTGGGTCCAGTGATGAGGTATTGTTGCCTCATCGTAGACGGGTTGGTCCTGAAACCATTCGGGTTTGTAATGGTTTGAATTCTTTTGGGAAGGATGTTGTGGATGAGAGTGGAAGTATCAGAAAGAAGGATAGGTTGCAGTATGTTAAGCGGAATGATGATGGTTTAATCAACAGGATGGATGTGGATGGTTTACGAAGAAATATGGACACCTTAGATGTCTTTGAGTTCAACGAATATGATGAAATTGATGGCGAGACTTTTCAGAGGAAGCATTTTAATGACAGTGGAGAAAGACGGTTTGTTGGTTCCATGAAACTGCCTCAAATGGGCGTTGAGAGGGAATTTGGAACCGCTTCTAGCAGGCATGCTTTGGTGGACAAGAGAAAGAATTTGTATGCTGAACAAACCAATAGCTTTGATCGGGACAGGCCTCCCAGAAAGATTAACTATGACTCAGATAATGACGGACCTCAACTCCCAACACCCTTGTTGAGAGATAAGTTTAGGGGTCATTCCGATGAAGCAATCAGGGTTCAGGGAAAAAATGGAGTTTTAAAGGTCATGGTAAACAAGAAGAAAAATGTGAGTGGTGCTTCCGATATGTATGATCATCGCAAATTAGAAGAAAGTAGAAAGAGTCTAAGGACTGAAGATACTCTGAAGAGGAAAGTGTTAGTTTCTTCTTCACTTCACCCAGAAACTAAGCCCAATGTGAAAGAGGATCTCTTTTCTAAGCCAGAGAAAGACCATACAGATTTTCAAACTTCAGCATCAACAAAAAATGTAAAGGGTTGCAGTTGGGATTCAGGGGACAGTAGTGTGTCATTGAAGCCCAGAAAAAAGGTTGTTGAAGCTCACAAATCCACCAAGAAGGCAAGTTGTGAGGTTGATAAAATTCCATGTGAAGAAACTCCCCCAAGTACAGCGAAGGAAGGAAAAGTAAAACGAGGCAGTGGAACAGAGAAACAAAAGCTACGTGAAAGGATCAGGGGAATGCTCCTTAGTGCTGGCTGGAAAATCGATTACAGACCCAGAAGGAATAGAGATTATTTAGATGCTGTCTATGTTAATCCCACTGGAACAGCTTATTGGTCAATTATTAAGGCTTATGATGCCCTTCAAAAGCAATTAAACGAAGAAGGAGCAGAGGCTAAACCTAGTGCTGATGGTTCATTTACACCAATATCAGATGATATCCTTAGTCAATTAACCAGGAAAACTAGAAAGAAAATTGAGAAAGAATGGAAAAATAAGCGGAGAGATGATAGTGACAGTGAAAATGCTAAAGAAGCAAGTGCACTAAGATCTGCTGGTACCAAAAATGACATGGACAGCATGGACAGTGACAGCAACGAAGAAAAGTTAAGTTCTTTCATAAAGCAGGGTGGAAAATCTTTTAAAAATAAATTGACCGAGAATGGTTTTCCCAGTGTCAACTCCAAAGGTCAAAGTTCTAGTAAGTATTTGCGTGATACCATTGTAAAATCTTCTTCTGGATCCAATTCACGTATTTTACATGGAAGAAGAGGTAGAAAGCTTGGATTGTTAGTTCGTGGCTCTAGTAGGGGATTAGATTCAGAGAATGATGGATATGTTCCATATACTGGTAAAAGGACTCTGCTTTCCTGGCTTATCGATTCTGGAACGGTGCAGTTGAGCCAAAAGGTCCGGTACATGAACCGCAGACAGACCCGGGTGATGCTGGAGGGGTGGATTACCAGAGATGGCATCCATTGTGGTTGCTGTAGCAAAATCCTAACTGTCTCTAAGTTTGAGATACATGCTGGAAGCAAATTACGTCAACCTTTTCAAAACATCTTTTTGGAGTCTGGGGTTTCTCTTCTGCAGTGCCAGAGAGATGCATGGAATAGACAGGAGGAGTCGAAACGCCTCAGTTTCCACACGGTTGAAATTGAGGGTGATGATCCGAATGATGACACATGTGGCATCTGCGGAGATGGTGGAGACTTAATCTGTTGTGATGGGTGTCCATCAACTTTTCATCAGAGTTGTTTAGATATTCAGATTCCTCCAGGTGATTGGCACTGCCCAAATTGTACTTGCAAGTATTGTGGAGTTGCCAGTGTTGATATTTCTCAGGGAGACAATACCATTGTTCCTGAGATATCTACTTGCATGTTATGCGAGAAAAAATTTCATGAGTCCTGCAATCTTGAGATGGATACTCCTGTTCATTCCAATGCTTCAGTCACTTCTTTTTGTGGCAAGAATTGCAGAGAGCTTTTTGAGAGTTTGCAGAAGCATCTTGGGGTGAAACATGAATTAGATGCAGGATTCTCATGGTCTCTTATCCGTAGAACAAGTGAAGATTCGGATGTATCTGTTCGTGGACTTTCTCAAAGGATCGAATGCAACTCTAAACTGGCTGTTGCATTAACAGTTATGGATGAATGCTTTTTGCCTATTGTTGACAGGAGGAGTGGGATAAATCTAATTCATAATGTTCTTTATAACTGTGGATCAAACTTTTATAGGCTAAATTATAGTGGCTTCTACACTGCTATTTTGGAAAGGGGTGATGAAATCATCTCTGCAGCAACAATCAGGTTTCATGGGACTAAGTTAGCTGAAATGCCATTCATTGGTACACGCCATATTTATAGACGTCAAGGAATGTGCCGTCGGCTTTTTTGCGCAATTGAATCTGCTCTCCGCGTGCTTAAGGTTGAGAAACTGATTATACCAGCAATCGCTGAGCTCATGCACACTTGGAGTGTGATTTTTGGCTTTAGTCCTCTGGAGCAATCACTCAAGCAAGAAATGAGACTGATGAATATGCTGGTGTTCCCTGGAACAGATATGTTACAGAAGCTGTTAATCCAAGAGACATTTATCGAGGAGAATACTTCTACTGGCTCAGGTGCAAAGCAAACGGATTGTAGAAGTACAGAGTTAAGTAGTCCTAAGATGGATACAGAGACCTCATCTGGCCATGAACCTCAAAGTTGTGATGACACTGAACAGCATCACTCCAAAGAGAAAAGAAATGAAGCAGCTGTCACTAAACCAAATCCTGAATCCGTGTCTGTTTCTCTAAATGATACTTCTGCAGCAAATAGTCCTCTGGATGCATTTTGTGAAGTTAAAAAGTCATGTTCTCCAATGCAAACTGTAAATTTGGATTGGGATTCTGGTGATAAAGTTAAATGTTTGTCTCAATCTGATTCACCCGACTCTCTTCAACGCAACATTAAGCCAGGAACTCAGCATGATATAGAGGACCATGTGCAGGTCACTTCCCAATGTATGGAAGCTGATACATCTTCAGACGGATTTCTTGAACCTAAGGTTAAAGTTTCAGATGAAGTAATCATTTGTTCCAATTCTCATGCTGGGCATGAGTTGGCTGACTCCGGTTCTGAGAAGAAATCTTTTCCTCCTGCAATAGGCAATGGCACCGATGAGTTTGTAAATGACATTCGCGTAGTGGATTCTCCTGAAGATGATAAGTCATTCAATAAGAATAATGGTCATGAATTTTGTGAAGACGATGTCCATGCTAATGCTCTCAAACCTGCTCAGTCGGTTGAGAATCCACTTGTCTCTAATGCTAGTTTATGTGGCACTAATGGACACCCCTACGAAACTACATCTGATTGCAAAAATGCAAGACCTTATGGGAAAGAAACTGTTTCTGATGGAATTTGTGACAGTGAAAATTCTCCACAGTCATGTGGGGCAAAAACCAGAGGTGATTCACAGGAAGAGAAAGCTGAATCAGTTAACAGAGGTGCCCTTGATGGAAGTAGGCATGGTTCAATTCACCCTTTCTCTTCTGAAATTGCTGCTTTCGAACATGAACACATTCATTATGCTGGGTGGTTTGGAAGCTCAGACTTCACTGTATGGTTGAACCTGGTTCGGGATCTCTCCAAACCAGCATATTTTCTAGAAATGGAGCATTCCCATTCTTGGTCAGGGATCTTTGACAGAACCATATTGATATTCAAGAATGGTATGACCACCAATTGTATAGGCTGTTTTGGTGGAATCTGGGAGCTTGTCAACTCAGTTTGTCTTGAATTTTTGCTGCTGTCTGTGATGGGCATTGTGTCGACGATTCGATTTTCTGTCGAAGACGACTCCGATTACAACTTACTGGTGGAGGAAGCCGGAAAAACCGAAGAGAGTTGTATCAAAGGAGAAGAAATGATGGGGAAGAGATCGGAAAGTGCAAAAGATGAAGGGGAGGATGGAGGGCAATTAGAGTGA 4413 41.88 MEDGVRSGGPSGVLVKTRNSSGCLIVRKKEDGLGGAGSSGSRLLNAKKEKKRPRLVLSDSGSSDEVLLPHRRRVGPETIRVCNGLNSFGKDVVDESGSIRKKDRLQYVKRNDDGLINRMDVDGLRRNMDTLDVFEFNEYDEIDGETFQRKHFNDSGERRFVGSMKLPQMGVEREFGTASSRHALVDKRKNLYAEQTNSFDRDRPPRKINYDSDNDGPQLPTPLLRDKFRGHSDEAIRVQGKNGVLKVMVNKKKNVSGASDMYDHRKLEESRKSLRTEDTLKRKVLVSSSLHPETKPNVKEDLFSKPEKDHTDFQTSASTKNVKGCSWDSGDSSVSLKPRKKVVEAHKSTKKASCEVDKIPCEETPPSTAKEGKVKRGSGTEKQKLRERIRGMLLSAGWKIDYRPRRNRDYLDAVYVNPTGTAYWSIIKAYDALQKQLNEEGAEAKPSADGSFTPISDDILSQLTRKTRKKIEKEWKNKRRDDSDSENAKEASALRSAGTKNDMDSMDSDSNEEKLSSFIKQGGKSFKNKLTENGFPSVNSKGQSSSKYLRDTIVKSSSGSNSRILHGRRGRKLGLLVRGSSRGLDSENDGYVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGVSLLQCQRDAWNRQEESKRLSFHTVEIEGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQIPPGDWHCPNCTCKYCGVASVDISQGDNTIVPEISTCMLCEKKFHESCNLEMDTPVHSNASVTSFCGKNCRELFESLQKHLGVKHELDAGFSWSLIRRTSEDSDVSVRGLSQRIECNSKLAVALTVMDECFLPIVDRRSGINLIHNVLYNCGSNFYRLNYSGFYTAILERGDEIISAATIRFHGTKLAEMPFIGTRHIYRRQGMCRRLFCAIESALRVLKVEKLIIPAIAELMHTWSVIFGFSPLEQSLKQEMRLMNMLVFPGTDMLQKLLIQETFIEENTSTGSGAKQTDCRSTELSSPKMDTETSSGHEPQSCDDTEQHHSKEKRNEAAVTKPNPESVSVSLNDTSAANSPLDAFCEVKKSCSPMQTVNLDWDSGDKVKCLSQSDSPDSLQRNIKPGTQHDIEDHVQVTSQCMEADTSSDGFLEPKVKVSDEVIICSNSHAGHELADSGSEKKSFPPAIGNGTDEFVNDIRVVDSPEDDKSFNKNNGHEFCEDDVHANALKPAQSVENPLVSNASLCGTNGHPYETTSDCKNARPYGKETVSDGICDSENSPQSCGAKTRGDSQEEKAESVNRGALDGSRHGSIHPFSSEIAAFEHEHIHYAGWFGSSDFTVWLNLVRDLSKPAYFLEMEHSHSWSGIFDRTILIFKNGMTTNCIGCFGGIWELVNSVCLEFLLLSVMGIVSTIRFSVEDDSDYNLLVEEAGKTEESCIKGEEMMGKRSESAKDEGEDGGQLE 1470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7007543 7018313 + CePI673135_06g006230.1 Cec06g0623 205360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0623 1470 MobiDBLite consensus disorder prediction 490 504 - -
Cec06g0623 1470 Pfam Domain of unknown function (DUF7028) 369 436 IPR054292 -
Cec06g0623 1470 MobiDBLite consensus disorder prediction 1045 1067 - -
Cec06g0623 1470 MobiDBLite consensus disorder prediction 368 382 - -
Cec06g0623 1470 MobiDBLite consensus disorder prediction 472 489 - -
Cec06g0623 1470 Pfam Tify domain binding domain 630 680 IPR032308 -
Cec06g0623 1470 PANTHER PHD FINGER PROTEIN 12 309 1121 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
Cec06g0623 1470 MobiDBLite consensus disorder prediction 1446 1470 - -
Cec06g0623 1470 MobiDBLite consensus disorder prediction 44 58 - -
Cec06g0623 1470 MobiDBLite consensus disorder prediction 1297 1311 - -
Cec06g0623 1470 ProSitePatterns Zinc finger PHD-type signature. 708 746 IPR019786 -
Cec06g0623 1470 MobiDBLite consensus disorder prediction 315 330 - -
Cec06g0623 1470 CDD PHD2_CHD_II 708 746 - -
Cec06g0623 1470 SMART PHD_3 707 747 IPR001965 -
Cec06g0623 1470 Pfam PHD-finger 708 746 IPR019787 -
Cec06g0623 1470 MobiDBLite consensus disorder prediction 1017 1044 - -
Cec06g0623 1470 ProSiteProfiles Zinc finger PHD-type profile. 705 749 IPR019787 -
Cec06g0623 1470 MobiDBLite consensus disorder prediction 30 61 - -
Cec06g0623 1470 MobiDBLite consensus disorder prediction 1278 1318 - -
Cec06g0623 1470 MobiDBLite consensus disorder prediction 1281 1296 - -
Cec06g0623 1470 MobiDBLite consensus disorder prediction 308 330 - -
Cec06g0623 1470 MobiDBLite consensus disorder prediction 194 220 - -
Cec06g0623 1470 MobiDBLite consensus disorder prediction 472 518 - -
Cec06g0623 1470 MobiDBLite consensus disorder prediction 363 382 - -
Cec06g0623 1470 MobiDBLite consensus disorder prediction 194 210 - -
Cec06g0623 1470 MobiDBLite consensus disorder prediction 1017 1082 - -
Cec06g0623 1470 SUPERFAMILY FYVE/PHD zinc finger 696 752 IPR011011 -
Cec06g0623 1470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 808 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0623 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0623 Cec-Chr6:7007543 Cec11g1808 Cec-Chr11:32240997 4.80E-108 dispersed
Cec02g2047 Cec-Chr2:38216686 Cec06g0623 Cec-Chr6:7007543 2.90E-86 transposed
Cec04g2279 Cec-Chr4:40437094 Cec06g0623 Cec-Chr6:7007543 6.60E-09 transposed
Cec05g2280 Cec-Chr5:34163951 Cec06g0623 Cec-Chr6:7007543 1.60E-66 transposed
Cec06g0623 Cec-Chr6:7007543 Cec09g0686 Cec-Chr9:6056345 2.40E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29752 PF16135 TDBD 4.60E-22 No_clan Cec TR