Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0640 ATGGGAATACTTGGAATTGGGTCTCTACACCCTTGGTTTTTGAGCTTTGATCAAAATTTCCTCTTGACAATGGGCACAGTAGGTGATAATTGGGGAGACGATTGTTCTGTCATTAAAGACAAAGGAGAGATTTCCTATATTGACTACGAAGACGATAAATCTGTTTGCAGTTATAATCCTATTGAGGAAGGTCCAGTTATTGTTTCAGTGCCATTTGCTTTTGTGAACGGCAAACCTCAATCAGTTTTCGTTGGAGAAACAGCGGTTGATGCCATTACCATCAAGAACACCACCGATGAATCAGTGGACCTATGGGCTGTTAATATTTATGCATCTAATCCTGAAAACTCATTTACGCTCTCTCTAATGGAGCCCCCAGCTCCAAATGCTGACATAGAAAGTGTACAAGCTTTCTTGGAGTCTTTTTCGTTGGAGGATAGAATGATCCATCCGGATGAGTCTCTTACTATATGGCTGTCTTGCAAACCAAAGGAAATTGGTTTGCACACAACAGTTGTGCATTTTGATCTCGGCAATGAAAGAATAGAACGAGTGTCTTTTCTTTTAGCAGATGATAAGATTTCACAGTCGTTGGCTTCTAGGAAGCCATATTCAAGAGATAGGAGAAGGAGGCATGAGGCAGTAGATTCGTATATTCCTGGCTCACGTCCTACTAGAACGCAAGGTCGGGGATTCAAAAATTTCCTTCTCCAATATGAAATCCCTAGTAGAATTAGAGATGAACTTAGCAGACAGGAGATCCCTAGTGCTGTTCGAGAAGGACTTAAAAGAGATACCTACATTCCCTATTTCATGACATTGTTGAACATGGAAGAAATACAATTGGAGGAAGACATGAGAGCTTATGATATGGAGCGTGTTACTATGAGAAGAAAGGGACATAACTTTTTGTCCCTCGAGGTTCCGGGGCTCGCTGAGAGAAGGCCTTCACTTGTCCATGGAGACTATATCCTTGCCAAGATGCCTTTTGGACATACAAATGACTCGGTTCCTGCTTATCAGGGGTATATTCATCACGTTGAAGCTGATGAAGTTTTCCTAAAATTTGCTCCAGAATTTCACATTAACCACAGAGATGACAATCTGTATAATGTCCAGTTTACCTACAACAGAATTAACATGAGAAGGTTCTATCAGGCTGTTGATGCTGCAGAAAGATTAGCAAAGGAGTTTCTGTTCCCATACGAGTTTTCAGAAAGAAGATATATCAAGACTACTCCACTGGTGCCTATAACTCAAAACATCAATGAGGAACAGATGCGTTGTGTTCAGATGATCCTTGGTTGCAGAGGTGCGCCACCTTATTTAGTTCATGGACCTCCTGGTACTGGTAAGACTCAAACTTTGGTGGAAGCTATCCTCCAACTCTACACAACACAAAAGAATGCTCGGATACTTGTTTGCGCTCCTTCAAATAGTGCTGCAGATCACATACTGGAGAAGCTTCTCAGTCAGGAGAGTGTTGAAATTCGTGATAATGATGTTTTCAGGCTAAATGCAAGCACACGACAATATGAGGAAATCAAGCCTGACCACCTTCGCTACTGCTTCTTTGATGAACACATTTTCAGGTGTCCTCCACTCAATGCCCTAGTCCACTATAGGATTGTCATTTCAACTTATATGAGTACTTCCCTTCTTTATGCTGAGGATATCAAGCGTGGTCACTTCTCTCACATTTTCTTGGATGAGGCTGGCCAAGCTTCAGAACCAGAATCCATAATTCCAGTATCCAACCTCTGTCTAAGGAGAACAGTTGTCGTTCTTGCTGGTGATCCCATGCAATTAGGTCCAGTGATTTACTCCAAGGAAGCAGAAATTTATGGATTGGGTAAATCATATTTGGAAAGGCTTTTTGAATGTGAATATTACAGCACTGGGGATGAAAACTATGTAATAAAGTTGTTAAGAAACTATAGATGTCATCCAGATATCTTACATCTTCCTTCTACATTGTTCTATGGTGGGGAACTAATTGCATGTAAAGATGAGAGAAGTCTCCTCACGGATACAGCAGATATTCTTCAAGTACTTCCTAATAAAGAGTTTCCTGTTCTTTTCTTTGGTATCCAAGGTTGTGATGAGCGAGAAGGCAACAATCCATCATGGTTTAACCGAATTGAGGTAAGCAAGGTGGTTGAGATTATAAGGAAACTGACTGATGGTGGAAATCTGAGTGAGGAAAATATCGGGGTCATAACGCCATATCGACAACAAGTGCTCAAAATAAGGACAGCCCTTGATAGCCTGGATATGCTTGATATAAAGGTTGGTAGTGTAGAACAATTTCAAGGACAAGAGAGGCAAGTGATTATTGTTTCTACTGTTCGATCAACAATCAAACACAATGAGTTTGACAGAACCTACTGTTTGGGGTTTTTGAGTAATCCAAGAAGGTTTAATGTGGCTGTTACCCGGGCTATGTCTCTTCTGGTCATAATTGGCAACCCCCATATAATCAATCAGGATATGCATTGGAACAAGCTGTTATGGCAGTGTGTTGAAAAAGGTTCATATCAAGGTTGTCCCCTTCCTGAAAGGCAGGACCCCACAGACGAGGAACAACCCTGCAATAACGAAGAGGGACAAAGTTCAGGATTTGGAGCAGGCCAGAATCCAGAGCAGCCGGAGCCAGCACTGGCACCGGAAACGGAATTTTCTGAACCAGTTGTTGATGAAGCTGAATGGTCTGATGGGTGGAAGTAA 2727 41.69 MGILGIGSLHPWFLSFDQNFLLTMGTVGDNWGDDCSVIKDKGEISYIDYEDDKSVCSYNPIEEGPVIVSVPFAFVNGKPQSVFVGETAVDAITIKNTTDESVDLWAVNIYASNPENSFTLSLMEPPAPNADIESVQAFLESFSLEDRMIHPDESLTIWLSCKPKEIGLHTTVVHFDLGNERIERVSFLLADDKISQSLASRKPYSRDRRRRHEAVDSYIPGSRPTRTQGRGFKNFLLQYEIPSRIRDELSRQEIPSAVREGLKRDTYIPYFMTLLNMEEIQLEEDMRAYDMERVTMRRKGHNFLSLEVPGLAERRPSLVHGDYILAKMPFGHTNDSVPAYQGYIHHVEADEVFLKFAPEFHINHRDDNLYNVQFTYNRINMRRFYQAVDAAERLAKEFLFPYEFSERRYIKTTPLVPITQNINEEQMRCVQMILGCRGAPPYLVHGPPGTGKTQTLVEAILQLYTTQKNARILVCAPSNSAADHILEKLLSQESVEIRDNDVFRLNASTRQYEEIKPDHLRYCFFDEHIFRCPPLNALVHYRIVISTYMSTSLLYAEDIKRGHFSHIFLDEAGQASEPESIIPVSNLCLRRTVVVLAGDPMQLGPVIYSKEAEIYGLGKSYLERLFECEYYSTGDENYVIKLLRNYRCHPDILHLPSTLFYGGELIACKDERSLLTDTADILQVLPNKEFPVLFFGIQGCDEREGNNPSWFNRIEVSKVVEIIRKLTDGGNLSEENIGVITPYRQQVLKIRTALDSLDMLDIKVGSVEQFQGQERQVIIVSTVRSTIKHNEFDRTYCLGFLSNPRRFNVAVTRAMSLLVIIGNPHIINQDMHWNKLLWQCVEKGSYQGCPLPERQDPTDEEQPCNNEEGQSSGFGAGQNPEQPEPALAPETEFSEPVVDEAEWSDGWK 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7151326 7156597 - CePI673135_06g006400.1 Cec06g0640 205377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0640 908 CDD SF1_C_Upf1 648 840 IPR047187 -
Cec06g0640 908 MobiDBLite consensus disorder prediction 864 878 - -
Cec06g0640 908 Pfam AAA domain 422 521 IPR041677 GO:0004386(InterPro)
Cec06g0640 908 Pfam AAA domain 540 610 IPR041677 GO:0004386(InterPro)
Cec06g0640 908 Pfam Helicase MOV-10, beta-barrel domain 289 374 IPR049080 -
Cec06g0640 908 MobiDBLite consensus disorder prediction 200 223 - -
Cec06g0640 908 Gene3D - 646 851 IPR027417 -
Cec06g0640 908 FunFam Probable RNA helicase SDE3 647 849 - -
Cec06g0640 908 PANTHER DNA2/NAM7 HELICASE FAMILY 179 877 IPR045055 GO:0005829(PANTHER)|GO:0035194(PANTHER)|GO:0043186(PANTHER)
Cec06g0640 908 FunFam Probable RNA helicase SDE3 533 633 - -
Cec06g0640 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 837 IPR027417 -
Cec06g0640 908 Gene3D - 340 633 IPR027417 -
Cec06g0640 908 CDD DEXXQc_Helz-like 423 647 IPR026122 GO:0003723(InterPro)|GO:0032574(InterPro)
Cec06g0640 908 MobiDBLite consensus disorder prediction 850 908 - -
Cec06g0640 908 FunFam Probable RNA helicase SDE3 371 516 - -
Cec06g0640 908 Pfam AAA domain 618 824 IPR041679 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0640 K18422 - - csv:101209925 1649.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0640 Cec-Chr6:7151326 Cec10g1733 Cec-Chr10:31991306 3.20E-38 dispersed
Cec06g0640 Cec-Chr6:7151326 Cec10g0201 Cec-Chr10:2123313 2.80E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g530 . Blo12g00334 Bda03g00877 . Bpe04g00822 . Bma04g00775 . Cmo08g01110 . . . . . . . . . . . . . . . Cla06g00598 Cam06g0637 Cec06g0640 Cco06g0643 Clacu06g0623 Cmu06g0616 Cre06g1384 Cone14ag0862 . . . . . . . . . . . . . . . . . . Cma08g01136 . Car08g01018 . . Cpe17g00154 . . . . . . . . . . . . . . Lsi09g01306 . . Cme01g01579
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009068 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34