Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0666 ATGGAATCCAAAGTTGCGTTTCAGAACGATCTGAATCTCGAAGCCACCGAGCTTCGTCTTGGACTACCTGGAGTCGTTACTGAAAGAGATAATTCATCGGAGAATTCATCTGGGGTTAAACCTAATAACAAGAGGAATTTTCGCAATGACTCTGCTCCTCCCTCAAAGGCTCAGGTTGTTGGGTGGCCACCGATTAGATCTTTTAGGAAAAATACACTTCAGGTGAAGAAAACGGAGGCCACGACGGCGACGGACGGCGGCGGAGGGATTTATGTGAAAGTGAGTATGGATGGTGCTCCTTATTTGAGGAAGATTGATTTGAGTCTCTATAAAGGCTACCCTGAACTTCTTAAAGCCTTGGAGGATATGTTCAAGTTTACCATCGGTCAATATTCTGAGAGGGAAGGTTATAAGGGATCTGATTTTGCTCCAACTTATGAAGATAAAGATGGTGATTGGATGCTTGTGGGTGATGTTCCATGGGAAATGTTTATTTCATCTTGCAAGAGGATGAGAATCATGAAAGGATCAGAAGTTGGGGGACTCAGCTGTGGCGTATGA 561 44.21 MESKVAFQNDLNLEATELRLGLPGVVTERDNSSENSSGVKPNNKRNFRNDSAPPSKAQVVGWPPIRSFRKNTLQVKKTEATTATDGGGGIYVKVSMDGAPYLRKIDLSLYKGYPELLKALEDMFKFTIGQYSEREGYKGSDFAPTYEDKDGDWMLVGDVPWEMFISSCKRMRIMKGSEVGGLSCGV 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7501036 7501898 - CePI673135_06g006660.1 Cec06g0666 205403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0666 186 Pfam AUX/IAA family 42 183 IPR033389 -
Cec06g0666 186 ProSiteProfiles PB1 domain profile. 89 176 IPR053793 -
Cec06g0666 186 Gene3D - 85 186 - -
Cec06g0666 186 FunFam Auxin-responsive protein 84 186 - -
Cec06g0666 186 SUPERFAMILY CAD & PB1 domains 82 175 - -
Cec06g0666 186 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 178 IPR003311 GO:0005634(InterPro)|GO:0006355(InterPro)
Cec06g0666 186 MobiDBLite consensus disorder prediction 28 53 - -
Cec06g0666 186 MobiDBLite consensus disorder prediction 24 60 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0666 K14484 - - csv:101204324 339.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0453 Cec-Chr1:4687916 Cec06g0666 Cec-Chr6:7501036 3.60E-49 dispersed
Cec05g0547 Cec-Chr5:4389809 Cec06g0666 Cec-Chr6:7501036 2.90E-64 dispersed
Cec06g0666 Cec-Chr6:7501036 Cec08g1226 Cec-Chr8:24190441 1.30E-42 dispersed
Cec06g0666 Cec-Chr6:7501036 Cec06g0668 Cec-Chr6:7537863 2.00E-43 proximal
Cec02g1741 Cec-Chr2:35198552 Cec06g0666 Cec-Chr6:7501036 1.20E-59 wgd
Cec05g0546 Cec-Chr5:4371602 Cec06g0666 Cec-Chr6:7501036 6.90E-41 wgd
Cec06g0666 Cec-Chr6:7501036 Cec07g0091 Cec-Chr7:942470 4.90E-26 wgd
Cec06g0666 Cec-Chr6:7501036 Cec09g0722 Cec-Chr9:6533850 3.30E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g603 . . Bda03g00851 . . Bpe14g01225 Bma04g00752 Bma05g01078 Cmo08g01090 Cmo17g00188 Cma06g01345 Cma14g01773 Car06g01166 Car14g01595 . . . . . . . . . . Cla06g00624 Cam06g0663 Cec06g0666 Cco06g0673 Clacu06g0650 Cmu06g0643 Cre06g1411 . . Cone7ag0293 Cone4ag0288 . Csa02g01107 Chy05g00367 Cme06g00549 Blo02g00604 Blo07g00242 Bda11g00609 . Bpe05g00869 Bpe13g00578 Bma02g00811 Bma06g01581 Sed09g0725 Cmo06g01357 Cmo14g01809 Cma08g01114 Cma17g00191 Car08g00997 Car17g00169 . Cpe17g00171 Bhi12g02258 Tan06g2467 Cmetu05g0496 . Hepe03g0246 . Lcy13g0326 Cla05g00491 Cam05g0536 Cec05g0547 Cco05g0548 Clacu05g0533 Cmu05g0505 Cre05g0574 Lsi09g01279 Csa03g01266 Chy06g00520 Cme05g00515
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000222 1 4 4 4 3 5 8 5 5 5 5 5 10 5 5 10 5 5 8 5 5 5 5 5 6 5 5 13 10 3 169
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29756 PF02309 AUX_IAA 5.20E-59 CL0072 Cec TR